Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1115 179 4e-40 seq4782 172 6e-38 seq2848 91.5 2e-13 seq1850 82.4 9e-11 >seq1115 Length=79802 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || || || || || ||||| ||||| || | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | || ||||| ||||| ||||| || || || || || || ||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| || ||||| || |||| |||||| || ||||||| || Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTACAAC 1791 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||| ||| |||| || |||||||| ||||| Sbjct 1792 ATCCAGAAAGAATCTACTCTGCATTTAGTATTACGTCTTCGTGGTGG 1838 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||||||||||||||| |||||| || | Sbjct 1390 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTCTTGAAGTTGAGCCATCT 1449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | || ||||| ||||| ||||| || || || || || || ||| Sbjct 1450 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1509 Query 27526 CAGCGTCT 27533 |||||||| Sbjct 1510 CAGCGTCT 1517 >seq4782 Length=111569 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| || || |||||||| ||||| |||||||||||| | Sbjct 12653 ATCATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCC 12712 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||||| |||| |||| | || |||||||| ||||| || || || |||||||| ||| Sbjct 12713 AGTGATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGAC 12772 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | | ||||||||||||||||| || ||||| | || || || |||||||| Sbjct 12773 CAACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTAT 12832 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| || || ||||| || |||| || | || | ||||| Sbjct 12833 AACATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGG 12882 >seq2848 Length=574677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || ||||| || ||||| |||||||||||| || Sbjct 153822 AATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACAATTACCCTTGAGGTTGAGCCATC 153881 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| |||| | || || || || || ||||| || || Sbjct 153882 TGATACTATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGG 153926 >seq1850 Length=1026905 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||| ||| | | ||||||||||||||||| || ||||| | || Sbjct 5258 GGTATTCCTCCTGACCAACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGC 5317 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||||| | ||||| || || ||||| || |||| || | || | Sbjct 5318 ACTCTCTCAGACTATAACATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGA 5377 Query 27628 GGTGG 27632 ||||| Sbjct 5378 GGTGG 5382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276017411760