Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1115 152 4e-32 seq4782 96.9 3e-15 >seq1115 Length=79802 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || || | || || |||||||| ||||| || Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||||||||| || ||||||||||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||||||| | ||||| || || | || || |||||| Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTACAAC 1791 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || || || || || | ||||| || || ||| | || ||||||| Sbjct 1792 ATCCAGAAAGAATCTACTCTGCATTTAGTATTACGTCTTCGTGGTGGCA 1840 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| |||||||||||||||| || || || Sbjct 1390 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTCTTGAAGTTGAGCCATCT 1449 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||||||||| || ||||||||||| Sbjct 1450 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1509 Query 27108 CAGCGT 27113 |||||| Sbjct 1510 CAGCGT 1515 >seq4782 Length=111569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | ||||| ||||| || || || Sbjct 12655 CATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAG 12714 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | |||||| ||||| || || |||||||| || || || || || Sbjct 12715 TGATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGACCA 12774 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | || || | || || || || | || ||| | || | || || || || Sbjct 12775 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTATAA 12834 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||||||||| ||||| || Sbjct 12835 CATTCAAAAAGAGTCTAC 12852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434892179856960