Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3013 123 6e-23 seq4823 122 2e-22 seq4782 109 1e-18 seq909 100 7e-16 >seq3013 Length=560567 Score = 123 bits (136), Expect = 6e-23 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||||||||||||||||| | | ||| |||||||||||| |||||| || Sbjct 293750 ATGTCAAGGGTTGGTAAGATTCTTCGAGGACCATCGTATTAAACCACATGTTCCACCACT 293809 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | || |||||| || ||||||||||||| |||||| ||||| |||||||||||| Sbjct 293810 TGTGCGAGCTCCCGTCAATTCCTTTGAGTTTTAATCTTGCGATCGTACTACTCAGGTGGA 293869 Query 7845 ATATTTA-CGCGTTAGCTTA 7863 |||||| || || ||||| Sbjct 293870 GTATTTATTGCTTTTGCTTA 293889 >seq4823 Length=13744 Score = 122 bits (134), Expect = 2e-22 Identities = 132/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || |||||| | || || ||||| |||||||||||||| ||| | || || || Sbjct 1382 TTTATAATGTTATTGTGACAGCTCATGCTTTTGTTATGATTTTTTTTATAGTGATACCTA 1323 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 | || || || || || || |||||| | ||||| ||| | |||||||| |||||||| Sbjct 1322 TGATAATTGGTGGGTTTGGGAATTGAATAGTTCCGTTATTAATTGGTGCACCTGATATAA 1263 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728 |||||| | | || |||||||| |||||||| || || ||||| |||||| Sbjct 1262 GTTTTCCTCGCATAAATAATATAAGATTTTGATTGCTTCCCCCTTCTTTTATTT 1209 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| || |||||||| ||||| || ||||| || || |||| Sbjct 814 TTCTGGATGCCCAAAAAATCAAAACAAATGTTGGTAAAGAATTGGATCACCCCCACCTGC 873 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| | ||||||||||||| ||||||||| Sbjct 874 AGGGTCAAAAAAAGTTGTATTAAAATTTCGATCAGTTAA 912 >seq4782 Length=111569 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||||||| || | ||||||||| || |||||||| | || || || | | ||| | | Sbjct 12873 AGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGC 12814 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| ||||| || || | | |||||||| || ||||||||||| Sbjct 12813 CCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCT 12754 Query 225616 TTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || || ||||| ||| |||| ||| ||| || || || || || || || | || Sbjct 12753 TTATCCTGGAT-TTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGT 12695 Query 225675 GATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 12694 AATGGTCTTGCCCGTCA 12678 >seq909 Length=818916 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||||||||| || || |||||||| ||||||||||| || |||||||| Sbjct 243468 AAGATCTGTCCATCAGTAATTGAAATGACATTTGTGGGGATATAAGCTGAGACATCACCA 243409 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||||||| || | || || | |||||||| |||||||| ||| Sbjct 243408 GCTTGTGTCTCAATGACTGGGAGAGCTGTTAGAGATCCACCTCCA 243364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192457507907162