Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3013 123 6e-23
seq4823 122 2e-22
seq4782 109 1e-18
seq909 100 7e-16
>seq3013
Length=560567
Score = 123 bits (136), Expect = 6e-23
Identities = 112/140 (80%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || |||||||||||||||||| | | ||| |||||||||||| |||||| ||
Sbjct 293750 ATGTCAAGGGTTGGTAAGATTCTTCGAGGACCATCGTATTAAACCACATGTTCCACCACT 293809
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | | || |||||| || ||||||||||||| |||||| ||||| ||||||||||||
Sbjct 293810 TGTGCGAGCTCCCGTCAATTCCTTTGAGTTTTAATCTTGCGATCGTACTACTCAGGTGGA 293869
Query 7845 ATATTTA-CGCGTTAGCTTA 7863
|||||| || || |||||
Sbjct 293870 GTATTTATTGCTTTTGCTTA 293889
>seq4823
Length=13744
Score = 122 bits (134), Expect = 2e-22
Identities = 132/174 (76%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615
|||| || |||||| | || || ||||| |||||||||||||| ||| | || || ||
Sbjct 1382 TTTATAATGTTATTGTGACAGCTCATGCTTTTGTTATGATTTTTTTTATAGTGATACCTA 1323
Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675
| || || || || || || |||||| | ||||| ||| | |||||||| ||||||||
Sbjct 1322 TGATAATTGGTGGGTTTGGGAATTGAATAGTTCCGTTATTAATTGGTGCACCTGATATAA 1263
Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728
|||||| | | || |||||||| |||||||| || || ||||| ||||||
Sbjct 1262 GTTTTCCTCGCATAAATAATATAAGATTTTGATTGCTTCCCCCTTCTTTTATTT 1209
Score = 102 bits (112), Expect = 2e-16
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| ||||| ||||||||||| || |||||||| ||||| || ||||| || || ||||
Sbjct 814 TTCTGGATGCCCAAAAAATCAAAACAAATGTTGGTAAAGAATTGGATCACCCCCACCTGC 873
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| |||||||| | ||||||||||||| |||||||||
Sbjct 874 AGGGTCAAAAAAAGTTGTATTAAAATTTCGATCAGTTAA 912
>seq4782
Length=111569
Score = 109 bits (120), Expect = 1e-18
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|||||||| || | ||||||||| || |||||||| | || || || | | ||| | |
Sbjct 12873 AGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGC 12814
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|| || || |||||||| ||||| || || | | |||||||| || |||||||||||
Sbjct 12813 CCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCT 12754
Query 225616 TTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|| || ||||| ||| |||| ||| ||| || || || || || || || | ||
Sbjct 12753 TTATCCTGGAT-TTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGT 12695
Query 225675 GATCGTCTTGCCCGTCA 225691
|| |||||||||||||
Sbjct 12694 AATGGTCTTGCCCGTCA 12678
>seq909
Length=818916
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| || || ||||||||||| || || |||||||| ||||||||||| || ||||||||
Sbjct 243468 AAGATCTGTCCATCAGTAATTGAAATGACATTTGTGGGGATATAAGCTGAGACATCACCA 243409
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
|||||||| || | || || | |||||||| |||||||| |||
Sbjct 243408 GCTTGTGTCTCAATGACTGGGAGAGCTGTTAGAGATCCACCTCCA 243364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192457507907162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |