Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4695 122 7e-23 seq4571 95.1 1e-14 >seq4695 Length=2473718 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 |||| || || || || ||||| || ||||| |||||||| || || | ||||| || | Sbjct 1457833 CTACCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAA 1457892 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 |||| | | ||| || || || || |||| ||| || | ||||||| |||||| | Sbjct 1457893 TAAAATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCA 1457952 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 | ||||| | ||||| || || || || |||||||||||||| ||| || ||| | | Sbjct 1457953 CCTCTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGT 1458012 Query 5110 ACTGAATCGGAAGTATGACAAATCT 5134 ||||||| || | | ||||||||| Sbjct 1458013 ACTGAATGGGGAACAAGACAAATCT 1458037 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 4352 TTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCAT 4411 ||||||||| || | || || | || ||| || |||||||| || |||| |||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 4412 GAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTC 4471 || || || || || ||||| || | ||||| || || | ||| | || |||||||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 4472 TATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAA 4531 || | || || ||| | ||||| || | | | | ||||||||||||||||| | ||| Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATAAACTCTGTCTTTAGATGGTTTATTGATTAA 1456892 Query 4532 GTATCCAAACAATAAACACGCAAAATCACAATG 4564 | | |||| | || |||||||||||||| Sbjct 1456893 ATGTTTGAACATCAGGCAAGCAAAATCACAATG 1456925 >seq4571 Length=833440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31762 TAGAGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAAT 31821 || || | |||| || || || |||||||| || | || || ||||||||| || | Sbjct 714482 TAAAGAGATAGTAAAGACAGACATTCAAATAGCTCTTCCAGATGGATGCTACGGAAGAGT 714541 Query 31822 AGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGA 31881 || || | ||||| ||||| | ||| |||| || || || ||||| ||||| || || Sbjct 714542 TGCCCCACGTTCTGGTTTGGCTGCGAAAAACTTCATTGATGTTGGTGCTGGTGTGATTGA 714601 Query 31882 TTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTT 31923 |||||| |||||||||||||| |||| || || ||||| Sbjct 714602 CCAAGACTACAGAGGAAACGTTGGTGTTGTTTTATTCAATTT 714643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427024497891059