Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1700 159 5e-34 seq4695 152 7e-32 >seq1700 Length=809593 Score = 159 bits (176), Expect = 5e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || || ||||||||||| ||| ||| || |||||||| || ||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| |||| | || || || ||| ||||||||||| ||||| |||||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGCATAGAAA 377137 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||||| | ||| || ||||| || |||||||| || || | ||| ||||| || | Sbjct 377136 AGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAAG 377077 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||||| | ||||||||| |||||||| ||||| | | ||||||| Sbjct 377076 ATATCCGCATGCCATGGCTCTAGATAGATTGCAAAGGCACCAGGTC 377031 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || |||||| | || || ||||||||||| || || | |||||| | |||||| ||||| Sbjct 382818 AGTAGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTG 382759 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || |||| ||| | ||||||||||| || | ||||||||| || || || |||||| Sbjct 382758 CTTGTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGC 382699 Query 77226 ATAGGTGCCACCAATAAACTATTTCT 77251 || ||||||| | | ||| ||||| Sbjct 382698 ATTGGTGCCATGAGGAGACTGTTTCT 382673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| | ||||| |||| || || | || || ||||| || | ||||| |||| Sbjct 373001 CACTAAAAATCTTTTTGCTTTCTTTATGCAAGTTGGAAACAGCAATACGAGCAGCAAGAA 372942 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 ||||||| || ||||| | |||||| ||| |||||| |||| ||||| | | || | Sbjct 372941 TAGCATAGTCGGGATGCTTTGTAGTCATAGTAGCTGCTGTTTCAGCCGCCAGGTTGTCCA 372882 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 ||| | ||| || |||||| ||| ||||| | || ||||| Sbjct 372881 GCTCAACAGTGGTAACCCCAGGATACAGTCCATTGATGACTTT 372839 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 77313 ACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCA 77372 ||| |||| | ||| | ||| |||||||| ||| || | || | || || ||| Sbjct 380626 ACACCCCACATATCATGTTGAAGAATTCCTTTAGACACAGGACAGCCTTCGTAAGTCTCA 380567 Query 77373 TAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTT 77432 |||| || | |||| || | |||||| || || || | ||| | | || || || Sbjct 380566 TAAGTCCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATGGTC 380507 Query 77433 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGA 77492 || ||||||| ||||| | | || |||||| || || || ||||| | | | Sbjct 380506 TCAAAAATCTCTTTATTCAACTGTTTGGCTTCAGGGCTGTCGAATGGATACCTCATCAAA 380447 Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 ||||| |||||||| || ||||||||||||| |||||||| | ||| Sbjct 380446 ATAAATGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGGGCGATG 380400 >seq4695 Length=2473718 Score = 152 bits (168), Expect = 7e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||||||||| ||||| |||||||| || ||||| ||||| | ||||| ||||| Sbjct 1457836 CCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAA 1457895 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| |||||| | | |||| || | ||| | || | ||||| |||| ||| || | Sbjct 1457896 AATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCT 1457955 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 |||| |||||||| ||||| |||||||||||||| ||||| | ||| || ||| ||| | Sbjct 1457956 CTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACT 1458015 Query 48703 GGATTGGGAAAATAACAAATCT 48724 | || ||||| | |||||||| Sbjct 1458016 GAATGGGGAACAAGACAAATCT 1458037 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| || |||||||| |||||||| || || ||||| || ||||| ||||| || || Sbjct 1456426 CATGACGCCCATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCCTC 1456485 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 || ||||| | ||||||||||||||||||||| ||| ||||||||| Sbjct 1456486 TAAAGATATGTGTTCCATAAAATCAAATGGATTTTCTGAATTATAAAT 1456533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694626920154720