Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4695 159 5e-34 seq1700 147 3e-30 >seq4695 Length=2473718 Score = 159 bits (176), Expect = 5e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||||||||| ||||| |||||||| || ||||| ||||| | ||||| |||||| Sbjct 1457837 CAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAA 1457896 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || ||||||||| | |||| || | ||| | || | ||||| |||| ||| || || Sbjct 1457897 ATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTC 1457956 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||| |||||||||||||| |||||||||||||| ||||| | ||| || ||| | || || Sbjct 1457957 TTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTG 1458016 Query 47193 GATCGGAAAAATAACAAATCT 47213 || || || | |||||||| Sbjct 1458017 AATGGGGAACAAGACAAATCT 1458037 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| |||||||| ||||| || ||| | ||||||| ||||||||||| || || | Sbjct 1456738 AGTCTGTCTGCAACAAATTCAATGTACTTCTTCATCAGCTCACAATTCATACCAATCAAG 1456797 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| || || || || ||||| || ||||||||||| | |||||||| ||||| Sbjct 1456798 TTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTCAATGGCAACAGCATCTTTAATTATT 1456857 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 ||| | || | | |||| || || |||||||| ||||| | || |||||| Sbjct 1456858 TCATAAACTCTGTCTTTAGATGGTTTATTGATTAAATGTTTGAACATCAGGCAAGCAAAA 1456917 Query 46639 TCACAATGAAGGCC 46652 ||||||||||| || Sbjct 1456918 TCACAATGAAGTCC 1456931 >seq1700 Length=809593 Score = 147 bits (162), Expect = 3e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || || ||||||||||| ||| || ||||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || |||| | || || || ||| ||||||||||| ||||| |||||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGCATAGAAA 377137 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||||| | ||| | ||||| || |||||||| || || | ||| || || || | Sbjct 377136 AGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAAG 377077 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 ||||| | ||||||||| |||||||| || || | |||| |||| Sbjct 377076 ATATCCGCATGCCATGGCTCTAGATAGATTGCAAAGGCACCAGGTC 377031 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || |||||| | || |||||||||||||| || || | |||||||| |||||| ||||| Sbjct 382818 AGTAGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTG 382759 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || |||| ||| | ||||||||||| || | ||||||||| || || || || ||| Sbjct 382758 CTTGTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGC 382699 Query 75821 ATAGGTGCCACCAATAAACTATTTCT 75846 || ||||||| | | ||| ||||| Sbjct 382698 ATTGGTGCCATGAGGAGACTGTTTCT 382673 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGAT--CCATTATATGTT 75964 ||| |||| | ||| | ||| |||||||| || || || | || || | || || Sbjct 380626 ACACCCCACATATCATGTTGAAGAATTCCTTT---AGACACAGGACAGCCTTCGTAAGTC 380570 Query 75965 TCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATT 76024 || |||||||| | |||||| || | ||| || || || || | ||| | | || || Sbjct 380569 TCATAAGTCCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATG 380510 Query 76025 GTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA 76084 || || ||||||| ||||| | | || |||||| | || || || ||||| | Sbjct 380509 GTCTCAAAAATCTCTTTATTCAACTGTTTGGCTTCAGGGCTGTCGAATGGATACCTCATC 380450 Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 | ||||||||||||||| | ||||||||||||| |||||||| | ||| Sbjct 380449 AAAATAAATGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGGGCGATG 380400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712891418967360