Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1115 125 2e-23 seq4782 109 1e-18 >seq1115 Length=79802 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| ||||| ||||||||||| || | | || | |||||||| || Sbjct 1815 ATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCAAGTTG 1756 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || |||||||| | |||||| || | | ||| ||||| || |||||||| || Sbjct 1755 TTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTT 1696 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | | |||| || || |||||||| || || ||||| || || Sbjct 1695 AGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTACCAGT 1636 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||| |||||| Sbjct 1635 AAGTGTTTTCACAAAGATCTGCAT 1612 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | ||| ||||| || |||||||| || ||||||| | || | | | Sbjct 1512 CTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGT 1453 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || ||| ||||||||||||||||| |||||||| | ||||| || |||| ||| Sbjct 1452 GTCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTG 1393 Query 152102 CATTTT 152107 ||| || Sbjct 1392 CATATT 1387 >seq4782 Length=111569 Score = 109 bits (120), Expect = 1e-18 Identities = 170/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| || || | || ||||||||||||||||| ||||| || || | | ||| Sbjct 12876 CTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTG 12817 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||| || || || || || || || || | |||||| ||||| | | || ||| Sbjct 12816 CGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCT 12757 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || ||||| ||||||| | || | ||| | ||| ||| || ||| Sbjct 12756 TCTTTATCCTGGATTTTAGCTTTGACATTTTCAA--TTGTAT-CACTGGGCTCAACCTCA 12700 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTTACTCTAC 152120 || ||||| || |||||||| || |||||||| || | |||||| | || ||||||| Sbjct 12699 AGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATGATGCCACCACTCTAC 12640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153749500004233