Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4695 104 2e-17 >seq4695 Length=2473718 Score = 104 bits (114), Expect = 2e-17 Identities = 111/142 (78%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATT--TCACTGCTTTATCACTA-TTCATAACACCCAT 23216 |||||| || |||||| | ||||| | ||| || | ||| ||||| || ||||| Sbjct 1456378 TTAAAAGTCCTCATCTGTGGAGAATTGATGGCTGGTTGGTGACTTGTTCATGACGCCCAT 1456437 Query 23217 TTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||| |||||||||||||| |||| || || ||||| || || |||||||| ||||| | Sbjct 1456438 TTTCTGATATTCCCCAAC-TTTCTTCTCAAAGAAATTCGTTTTCCCCTCTAAAGATATGT 1456496 Query 23276 TTTCCATAAAATCAAATGGATT 23297 ||||||||||||||||||||| Sbjct 1456497 GTTCCATAAAATCAAATGGATT 1456518 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 || ||| || ||||| ||||||||||| || | ||||| ||| | || ||||| || Sbjct 1456734 TAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCATCAGCTCACAATTCATACCAAT 1456793 Query 23394 TAGTTTTACTGGAATCGCATCATATAA-GAATAGTTTTTCAATGGAAACAGCATCTTTAA 23452 | || || || | ||||| | ||| |||| || |||||||| |||||||||||||| Sbjct 1456794 CAAGTTGACAGGCAGGGCATC-TGTAAGGAATTCTTGTTCAATGGCAACAGCATCTTTAA 1456852 Query 23453 TTATTTGAACAATAACTTCTTCACTAGGTGG-ATATT--TTAAATACTTAAACAATAAAC 23509 |||||| || |||| || ||| ||| |||| |||||| || |||| | | Sbjct 1456853 TTATTT---CATAAACTCTGTCTTTAGATGGTTTATTGATTAAATGTTTGAACATCAGGC 1456909 Query 23510 ATGCAAAATCACAATGTAGGCC 23531 | |||||||||||||| || || Sbjct 1456910 AAGCAAAATCACAATGAAGTCC 1456931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || |||||||| |||||||||||||| ||| || | |||||| || || Sbjct 1457592 ATCTTTGATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGC 1457651 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 ||| ||||| ||||||||||| | ||| || | || ||||| || ||| ||||||| Sbjct 1457652 AATTTGAAAACCATAAAAACAACGAGCCTCTGTCACCTGAACCTCTTTACTGAATCTTT 1457710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGT-TTTTT 23591 ||||| || || || | ||||| || ||||| || ||||| ||||| | | ||||| Sbjct 1457252 TCATCTCTGCTGATAAGCTCATTGCTGAAAGTTAAGCCAGGCAT-AATCCCCCTCTTTTT 1457310 Query 23592 AATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGC 23651 | |||||| |||||||| || ||||| || || ||||| || || ||||| ||||| || Sbjct 1457311 CAACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAAAAGC 1457370 Query 23652 CACAAGACGTGTACCAAATGT-TGCATTATAATCAGAAATCCAtttttttGTCCAATTAG 23710 |||| | | || ||| ||| | | |||| |||||| || | | ||| | | Sbjct 1457371 TACAACTCTTTCACTGTATGGATGC-TCAGCATCACCAATCCACTTAATGGCCCATTCTG 1457429 Query 23711 CCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAA 23756 ||||| | | ||||| || ||||||||||| || || || || Sbjct 1457430 CCTTCTTTCTCACACAAGGAAGGGTTTCAATTGCATTGAACAGGAA 1457475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521456560792200