Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4782 109 5e-19 >seq4782 Length=111569 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| || |||||||||||||| ||||| |||||| |||| || |||||||| || || || Sbjct 12847 CTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAA 12788 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| | ||||||||| | |||| | || || ||| || |||| |||| || Sbjct 12787 AATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC-TGGATTTTAGCTTTGACAT 12729 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || || || | ||| ||||| | || || || || |||||||| ||||| | Sbjct 12728 TTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCA 12669 Query 41850 CGAAAATCTGCATG 41863 | |||||||||||| Sbjct 12668 CAAAAATCTGCATG 12655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462276128847600