Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-13 seq12 89.7 1e-12 seq5 89.7 1e-12 >seq1 Length=9333084 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| | |||| ||||||||| Sbjct 443103 TGCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAG 443162 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 443163 CCCCCCGTTGGGC 443175 >seq12 Length=1744794 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| ||||| ||||||| | |||| |||||||||| Sbjct 324877 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAGC 324818 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 324817 CCCCCGTTGGGC 324806 >seq5 Length=3294854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| ||||| ||||||| | |||| |||||||||| Sbjct 1039078 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAGC 1039019 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 1039018 CCCCCGTTGGGC 1039007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821289326000