Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 5e-13 >seq14 Length=1536585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 193/286 (67%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| || ||||||||||| || || | ||||| ||||| ||||| Sbjct 515833 ATGTACGTGTCGATCAGCAAGCTGTACATTTCCGAATGGACATTCTCCATGGCGATCTGG 515892 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || ||||| | || || || | ||| || ||||| | || || || | | | Sbjct 515893 AAGCCGTAGAATGAGCGGGCTTCAGGTATCTGGACTTCTTGCGAGAACCGCTCGGTTAAG 515952 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATA-TGTGCTTA--ATGAAA 16648 || || || ||||| ||||| || || || || || |||| | ||| || | | || Sbjct 515953 TTTTCGTTGACGATGCCGTCGCTAGCGGCGAAGAAGGCCAGGATTGTACTGACGAAGAGC 516012 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 | || ||||||| | || | | ||| |||| | ||||||| | || |||||| Sbjct 516013 TGTTCTTCGTCA---TTCAGGCTGTTCCAGTCTTCCATGTCTTTGGCCAGGTCTACTTCT 516069 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAA 16754 || ||||| ||| ||| ||| || || ||||| | | ||| Sbjct 516070 TCCACGGTCCAGAAGGAGGCCGTTGCTTTCTTGTACATCTGCAAAA 516115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413121464000