Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18 100 3e-16 seq2 93.3 5e-14 >seq18 Length=652692 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||||| || ||||| | ||||||||||||||||||||||| || ||||| Sbjct 264264 ATCTTTGATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGC 264323 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || || || |||||||| | | ||| ||||||||||| ||||| Sbjct 264324 GATCTGGAAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTC 264368 >seq2 Length=9028361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||||||||| |||||||| || || || || | | | |||| || || || ||||| | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || ||||| || |||||||||||| | || || ||||| || || || ||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 52995 TTTGTGGAATTTCCCA 53010 | || ||||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720115696000