Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq2 89.7 4e-13 >seq1 Length=9333084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | ||||| | | || |||||||||||||| Sbjct 5359998 GTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCG 5360057 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| || | ||||||||| || |||||| || Sbjct 5360058 GCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5360117 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || || ||| |||| || ||||||||||| || ||||| Sbjct 5360118 ACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTCAACGTC 5360177 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 5360178 TTGACGAAGATCTGCAT 5360194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | || | || || ||||| || ||||| ||||| | Sbjct 5359740 CCACCTCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTC 5359799 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | |||| |||||||| ||||| || | || || | ||||||||| || Sbjct 5359800 AAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGA 5359859 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | ||| ||| ||| | |||| | Sbjct 5359860 ATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACT 5359919 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || ||||| || || ||||| Sbjct 5359920 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 5359511 TCCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGA 5359570 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| | | |||||||||||||| |||||| | || || | || || ||| || Sbjct 5359571 AAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGG 5359630 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| ||||| || || | ||| || ||| | || Sbjct 5359631 GATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGAC 5359690 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| ||||| || || || ||||| || || ||||| Sbjct 5359691 CTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 >seq2 Length=9028361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || || | ||| | || ||||| || || || || ||||| | | Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | || |||||||| || || ||| | || || | ||||| ||| || Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| || || || || | ||| ||| || || ||| | Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| ||| ||||| || || ||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | || |||| || | ||| ||||| || |||||||||||||| Sbjct 3912947 TCCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCT 3913006 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || |||| |||||||| ||||| || | || | | ||||||||| || Sbjct 3913007 GAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGG 3913066 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||| || ||||| ||| || | | | ||||| || ||| Sbjct 3913067 GATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCAC 3913126 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||||||||| || | || ||||| || |||||||| Sbjct 3913127 TTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258170743200