Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 172 6e-38 seq1 147 2e-30 seq2 127 2e-24 seq18 125 7e-24 >seq14 Length=1536585 Score = 172 bits (190), Expect = 6e-38 Identities = 204/274 (74%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| || || ||| || ||||||||||| || || || |||||| |||| ||| Sbjct 516107 ATGTACAAGAAAGCAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGGCCAAAGAC 516048 Query 116705 ACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACG-TGCTGGC 116763 | | |||||| | || |||| ||| | || | | ||| ||| | || | ||||| Sbjct 516047 ATGGAAGACTGGAACAGCCTGAATGACGAAGAACAGCTCTTCGTCA-GTACAATCCTGGC 515989 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||| |||||||| |||||||||||||||||||| || | |||||| ||| | || || Sbjct 515988 CTTCTTCGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGTTCTCGCAAGA 515929 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 || ||| | | || || || | ||||||||||| ||||||||||||||||| || || Sbjct 515928 AGTCCAGATACCTGAAGCCCGCTCATTCTACGGCTTCCAGATCGCCATGGAGAATGTCCA 515869 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||||||| || |||||||||||| Sbjct 515868 TTCGGAAATGTACAGCTTGCTGATCGACACGTAC 515835 Score = 125 bits (138), Expect = 7e-24 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| | || || |||||| | || || |||| || || |||||||| || | Sbjct 515749 TGTTCAACGCAGTTGAAACCATGCCGAGTGTGAAGAAGAAAGCGGATTGGGCGCTTCGGT 515690 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | || || || | || ||||| || | || || ||||| || || |||| Sbjct 515689 GGATCTCGAATAGTGAAGCATCTTTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAGG 515630 Query 117066 GCGTCTTCTTTTCGGGCAGT--TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || |||| |||| | || ||||| |||||||| |||||||||||||| || ||||| Sbjct 515629 GCATCTT--TTTCAGTGGGTCCTTCGCGGCCATATTCTGGCTCAAGAAACGAGGGCTCAT 515572 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCAT 117153 ||| ||| |||| | ||||||||| || || Sbjct 515571 GCCAGGCTTGACCTACAGCAACGAACTGAT 515542 >seq1 Length=9333084 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||||||||||||||| | || |||||||| | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || |||||||| |||| || Sbjct 5359678 GACACCATCGAGAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCA 5359620 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||||| ||||||||||| || | |||||||| |||||||| Sbjct 5359619 ACAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAA 5359560 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || ||| |||| Sbjct 5359559 CATACAGAAGGAGTCTACTCTTCATTTAGT 5359530 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| |||| || || || | Sbjct 5359966 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTCT 5359907 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| | || || | ||||| || || || || ||||||| Sbjct 5359906 GACACTATCGAGAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCA 5359848 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| ||||| |||||||| |||| || ||| | | ||||||||| Sbjct 5359847 GCAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGCGACTACAA 5359788 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 5359787 CATCCAGAAGGAATCGACCCTCCACCTTGT 5359758 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| |||||||| | || || |||||| | Sbjct 5360194 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCTCG 5360135 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | || || || ||||| || |||||||| Sbjct 5360134 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGACCAG 5360075 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| |||||||||||||| || | | ||||| ||||||||| Sbjct 5360074 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACAAC 5360015 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| || || Sbjct 5360014 ATCCAGAAAGAGTCCACCCTTCA 5359992 >seq2 Length=9028361 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| |||| || || || | Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| |||||||| || ||||| |||| || Sbjct 3913570 GACACGATCGAGAACG-TCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCA 3913512 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 3913511 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAA 3913452 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| | || || || Sbjct 3913451 CATCCAGAAAGAGTCGACCCTACA 3913428 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||||||| | || || ||| | | Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | || |||| || || || || ||||| |||||||| Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| ||||| |||||||| |||| | || |||| |||||| ||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAAC 3912995 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||| | || || || Sbjct 3912994 ATTCAGAAAGAGTCGACTCTCCA 3912972 >seq18 Length=652692 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| | ||||||||||||| || ||||||| || ||||||||| | | Sbjct 264135 TGTTTAACGCTGTGGAGACGATGCCGTCTGTGCGGAAGAAGGCTGACTGGGCGCTGAGTT 264076 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | | ||| ||| |||||| ||| | || |||||||| ||||||||| Sbjct 264075 GGATCAACTCGTCCAACGCCACCTACGGCGAACGCGTCGTCGCCTTCGCTTCCGTCGAGG 264016 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| ||| |||||| |||| || |||||| ||||| || | |||| Sbjct 264015 GCATCTTCTTCAGTGGCTCCTTCGCCTCCATCTTCTGGCTCCGTAAACGAGGAATAATGC 263956 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | || || || ||||||||||| |||||| | ||||||| Sbjct 263955 CTGGTCTCACCTTCAGCAACGAACTCATCAGTCGCGACGAGG 263914 Score = 113 bits (124), Expect = 5e-20 Identities = 136/179 (76%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| ||||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct 264694 ATGTACAAGAAGGCCGTAGCTTCGTTCTGGACGACGGAAGAGGTCGATCTGTCGAAGGAT 264635 Query 116705 ACGAGCGAC--TGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTG 116761 | || || ||||| ||||| || | ||||||| || |||||| ||||| || Sbjct 264634 --GTGCAACAATGGGAAGCGCT-GACGGCCAACGAGAAGCACTTCATCTCCCACGTCTTG 264578 Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCA 116820 ||||| ||||| |||||||| ||||||||||||||||| || || ||| ||| | ||| Sbjct 264577 GCCTTCTTCGCAGCCAGCGATGGCATCGTCAACGAGAACCTCGT-GAGTCTTTTGGTCA 264520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || |||||| ||||| |||||| | |||| || || | |||||||||||| || Sbjct 264387 GGTGGAACGTTTCAGCCAGGAAGTGCAGATTACCGAAGCTCGCTTCTTCTACGGCTTCCA 264328 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 ||||||||| |||||| | || |||||||||||| Sbjct 264327 GATCGCCATCGAGAACATTCATTCGGAAATGTAT 264294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217911952000