Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 96.9 3e-15 >seq2 Length=9028361 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || || ||||| || || || || ||| || ||||| ||||| Sbjct 3913206 GTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCTTCCAGCTGCTTTCCG 3913265 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||| |||||||| ||||| ||||| ||||||||| |||||| || Sbjct 3913266 GCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCCTTG 3913325 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | || || |||| ||| | || || || || || || Sbjct 3913326 ACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTC 3913385 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 3913386 TTGACGAAAATCTGCAT 3913402 >seq1 Length=9333084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||| || | || | ||| || Sbjct 5359986 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCC 5360045 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||| ||||||||||| || ||||| ||||| ||||| || Sbjct 5360046 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGG 5360105 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| | || ||||| | || | || ||| Sbjct 5360106 ATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTG 5360165 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || |||| || || || || |||||||||| Sbjct 5360166 CCAGTCAACGTCTTGACGAAGATCTGCATGG 5360196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829342538400