Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2 104 4e-17 >seq2 Length=9028361 Score = 104 bits (114), Expect = 4e-17 Identities = 204/291 (70%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 189452 TGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATG 189511 |||||||| | || ||||||||| |||||||| ||| ||| |||| | || ||| Sbjct 7730686 TGGAACGCCGCGCAGATGCAGATGAACAGAGAAGGTAAATGTCATGGTTTCATGCGCATG 7730627 Query 189512 TATTGGGCTAAGAAGATACTTGAATGGACT-AGAACACCTGA-AGACGCTTTGAGTTATA 189569 || ||||| |||||||| ||||| ||||| ||||| | | || |||| ||||| | Sbjct 7730626 TACTGGGCCAAGAAGATCCTTGAGTGGACGGAGAACCCACAACAGGCGCTG-GAGTTCTC 7730568 Query 189570 GTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGT 189628 || | ||||| | ||||| | || || ||| || || || || || || || Sbjct 7730567 C-ATAAAGTTGAATGATAAGTATAGCTTGGATGG-ACGAGACCCGAATGGCTATGTGGGA 7730510 Query 189629 TGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATTTGG 189687 || |||||||| || || ||| ||| || || || ||| |||| || | | ||||| Sbjct 7730509 TGCATGTGGTCCATCTGTGGAACACATGACCAGGGC-TGGGCAGAACGAGAGGTGTTTGG 7730451 Query 189688 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGC 189738 |||||| | |||||||| ||| | | | ||||| || |||||||| || Sbjct 7730450 AAAGATTCGCTATATGAACTATAATGGATGTAAGAGAAAGTTTGATGTGGC 7730400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923194492008000