Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 102 9e-17 seq1 95.1 1e-14 seq15 84.2 3e-11 seq12 84.2 3e-11 seq7 82.4 9e-11 >seq2 Length=9028361 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||||| || | ||| | || ||| || || |||||||| |||| | Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || ||||| || ||||| || | || Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| |||| | |||| || | | ||||| | |||||| Sbjct 3913296 ATGCCTTCCTTGTCT-TGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCAC 3913354 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || |||||||||||||| || || || ||||| Sbjct 3913355 TTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 >seq1 Length=9333084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| || | ||| ||| || || || ||||| |||| Sbjct 5359968 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAT 5360027 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||| || || ||||| || || ||||||||||| | || Sbjct 5360028 AGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 5360087 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || |||| || | | |||||| | |||||| Sbjct 5360088 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACC 5360147 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | |||||| || ||||| ||||| Sbjct 5360148 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || || ||||| ||||| || || Sbjct 5359547 CTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAA 5359606 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || || || || || | || | || ||||||||| ||| | || | |||| Sbjct 5359607 GATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCC-TGAATCTTGGCCTTGACGT 5359665 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| | ||| || || | |||||||||||||||||| | ||||| | Sbjct 5359666 TCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGA 5359725 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 5359726 CGAAGATCTGCAT 5359738 >seq15 Length=1295620 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||| || ||||||||||||| |||||||||||| Sbjct 66016 TCTCCCAGACCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACT 66075 Query 60125 ATACTA 60130 |||||| Sbjct 66076 ATACTA 66081 >seq12 Length=1744794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||| || ||||||||||||| |||||||||||| Sbjct 111138 TCTCCCAGACCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACT 111197 Query 60125 ATACTA 60130 |||||| Sbjct 111198 ATACTA 111203 >seq7 Length=2342111 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| Sbjct 1601302 GGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTATACTA 1601356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816170456000