Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq1 87.8 1e-12 >seq2 Length=9028361 Score = 100 bits (110), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||||| || |||||||| |||||||||||||| || ||| | || Sbjct 3913419 AGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCT 3913478 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 |||| ||||||||| ||||| || || ||||| || || || || || || || |||| Sbjct 3913479 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATAC-CT-TCTTTGT 3913536 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | | | |||| || | | || || || | |||||||| Sbjct 3913537 CCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGG 3913596 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 | ||||| ||||| || || |||||||||||||||| Sbjct 3913597 TCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATCG 3913632 >seq1 Length=9333084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || | | | || |||| ||| ||||| ||||| Sbjct 5360004 TCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAG 5360063 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | || ||||| || ||||| ||| | || Sbjct 5360064 ATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 5360123 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | | ||| || |||| |||||||| ||||| || | || || || Sbjct 5360124 TCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACG 5360183 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 5360184 AAGATCTGCAT 5360194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071212512000