Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 seq1 82.4 6e-11 >seq2 Length=9028361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 ||||| || || || | |||||||| ||| || || || ||||| |||||||| |||||| Sbjct 3912945 TATCCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCG 3913004 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | ||| | | ||||||| || ||||| || |||| | | ||| || ||| Sbjct 3913005 CTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGA 3913064 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||||||||| ||| | | || ||||| | ||| || || || || Sbjct 3913065 GGGATACCTTCCTTATCTTGAATCT-TGGCTTTGACATTCTCAATGGTATCCGAAGGTTC 3913123 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| | ||||| |||| ||| || || || |||||||| Sbjct 3913124 CACTTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 >seq1 Length=9333084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 ||||| || || || | || || | ||||| || || || || || ||||||||||| Sbjct 5359509 TATCCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCA 5359568 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | | || | ||| |||| ||||| |||||| |||| || | |||||||||| Sbjct 5359569 GAAAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGA 5359628 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 || | ||||||||| || ||| | |||||| | | | |||||| | ||| Sbjct 5359629 GGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCG 5359688 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| ||||| || || || || || ||||| Sbjct 5359689 ACCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343075349000