Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq1 127 2e-24 seq14 82.4 7e-11 >seq2 Length=9028361 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||||||||| || |||||| | || || ||||| || Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| | || || |||||||| | || || |||||| Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||||||||| ||| |||||||| | ||| | ||||| |||||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAAC 3912995 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| |||||||| || |||||||| | ||| | || || Sbjct 3912994 ATTCAGAAAGAGTCGACTCTCCACTTGGTACTTCGCCTGCGTGGTGG 3912948 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || |||||| |||| || ||||| || Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | ||| |||||||||||| | || || || ||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAG 3913283 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || ||| ||||||| || || || || || Sbjct 3913282 CAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAAT 3913223 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| ||||| |||||||| || || Sbjct 3913222 ATCCAGAAAGAGTCGACCCTTCATCTCGTCCT 3913191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || ||||| |||| ||||| || || Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| ||||| | || || || || Sbjct 3913570 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAA 3913511 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| ||||||| || | ||| || ||| Sbjct 3913510 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAAC 3913451 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| ||||| || || |||| || Sbjct 3913450 ATCCAGAAAGAGTCGACCCTACACTTGGTCCT 3913419 >seq1 Length=9333084 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| || || |||| Sbjct 5359967 CATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTC 5359908 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | |||||| | || |||||||||||| | || || ||||| Sbjct 5359907 TGACACTATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCA 5359848 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || ||||| ||||| ||| |||||||| || ||||||| || || Sbjct 5359847 GCAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGCGACTACAA 5359788 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || |||||||| || || || || || Sbjct 5359787 CATCCAGAAGGAATCGACCCTCCACCTTGTCCT 5359755 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| | | |||||| || ||||| ||||| |||| ||||| || ||||| | || || Sbjct 5360203 GAAGCCACCATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTG 5360144 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 ||| | || |||| |||| | ||||| | || ||| ||||||||| | || Sbjct 5360143 GAAGCCTCGGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCT 5360084 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || |||||||||||||| || ||||| ||||||||| ||||||| | ||| | Sbjct 5360083 CCGGACCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCT 5360024 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || ||||| || || ||||| |||| ||| Sbjct 5360023 GACTACAACATCCAGAAAGAGTCCACCCTTCACTTGGTCCTT 5359982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| |||||||| ||||| | || || ||| | || Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || || || Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || || || || |||||| |||| || | | | || | || || || Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGA-TGGACGCACCCTTTCTGACTACAA 5359560 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||||||| | || || Sbjct 5359559 CATACAGAAGGAGTCTACTCTTCATTTAGTCCT 5359527 >seq14 Length=1536585 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 ||||||||||||| || || || || || || || ||| ||||| ||||| ||| Sbjct 515650 TCGCGTTCGCCGCGGTTGAGGGCATCTTTTTCAGTGGGTCCTTCGCGGCCATATTCTGGC 515591 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | |||||||| || || ||||| ||| |||| | |||||||| ||||| ||||||| Sbjct 515590 TCAAGAAACGAGGGCTCATGCCAGGCTTGACCTACAGCAACGAACTGATAAGTCGCGACG 515531 Query 58099 AGG 58101 ||| Sbjct 515530 AGG 515528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765285584000