Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18 109 7e-19 seq2 87.8 2e-12 >seq18 Length=652692 Score = 109 bits (120), Expect = 7e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | || || |||||||| | ||||||||||||||||||||||| || ||||| Sbjct 264264 ATCTTTGATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGC 264323 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||| || |||||||| | | ||| ||||||||||||||||| Sbjct 264324 GATCTGGAAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTC 264368 >seq2 Length=9028361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||||||||| |||||||| || || || || | | | |||| || || || ||||| | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || ||||| || |||||||||||| | || || ||||| || || || ||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 62233 TTTGTGCAATTTCCCA 62248 | || | ||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816025456000