Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq1 104 2e-17 >seq2 Length=9028361 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || |||||||| ||||||||||| ||||| | ||| || |||||| Sbjct 3912966 ACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCC 3913025 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||||| |||||||| || ||||| || ||||| || || || Sbjct 3913026 AGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATC-TTG 3913084 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | || | || || | || ||||| || | ||| | ||||| Sbjct 3913085 AATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTT 3913144 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||| || || ||||| |||||||| Sbjct 3913145 GCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || | |||| || |||||||| || || || || || | Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || ||| |||| |||||||||||||| ||||| Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | || | | || | ||||| | || ||||| Sbjct 3913296 ATGCCTTCCTTGTC-TTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCAC 3913354 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| || || | ||| || ||||| || |||||| || Sbjct 3913355 TTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCATACCT 3913406 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| || ||||| || ||| Sbjct 3913404 CCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 3913463 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || ||||| |||||||||| || ||||| ||||| Sbjct 3913464 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGG 3913523 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | || | | || | ||||| | |||||| || Sbjct 3913524 ATACCTTCTTTGTC-CTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAAC 3913582 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | || || || || || ||||| Sbjct 3913583 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||| |||| |||||||| || || ||||| || || Sbjct 5359512 CCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAA 5359571 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||||||||| ||| ||||||||||||| ||||| ||||| Sbjct 5359572 AGGGTGCGTCCA-TCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGG 5359630 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | || | || | | || | ||||| | | || | Sbjct 5359631 GATGCCTTCCTTGTC-CTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGA 5359689 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | || ||||| ||||| || || ||||| || |||||| Sbjct 5359690 CCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCATA 5359739 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||| | || || || || || ||||| || |||||| Sbjct 5359740 CCACCTCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTC 5359799 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || || |||| ||||||||||| || || || Sbjct 5359800 AAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGA 5359859 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||| | | |||||| Sbjct 5359860 ATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACT 5359919 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | || || ||||| || ||||| Sbjct 5359920 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062759840000