Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18 109 8e-19 seq14 96.9 5e-15 seq2 96.9 5e-15 >seq18 Length=652692 Score = 109 bits (120), Expect = 8e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | || || |||||||| | ||||||||||||||||||||||| || ||||| Sbjct 264264 ATCTTTGATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGC 264323 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||| || |||||||| | | ||| ||||||||||||||||| Sbjct 264324 GATCTGGAAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTC 264368 >seq14 Length=1536585 Score = 96.9 bits (106), Expect = 5e-15 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||| | || || ||||||| | || |||||||||||||| | || || ||||| Sbjct 515827 TCTTTGATGTACGTGTCGATCAGCAAGCTGTACATTTCCGAATGGACATTCTCCATGGCG 515886 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||| || |||||||| | | || || | ||||| |||||| | || || || Sbjct 515887 ATCTGGAAGCCGTAGAATGAGCGGGCTTCAGGTATCTGGACTTCTTGCGAGAACCGCTCG 515946 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT-TTTAT 50399 | ||| ||||| || || || ||||| || || || || || |||| | ||| | | Sbjct 515947 GTTAAGTTTTCGTTGACGATGCCGTCGCTAGCGGCGAAGAAGGCCAGGA-TTGTACTGAC 516005 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 || | | ||| | | | || | ||||| || | || ||||| | | ||||| Sbjct 516006 GAAGAGCTGTTCTTCGTCATTCAGGCTGTTCCAGTCTTCCATGTCTTTGGCCAGGTCTAC 516065 Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||||||| ||||| || || ||| ||| || || ||||| Sbjct 516066 TTCTTCCACGGTCCAGAAGGAGGCCGTTGCTTTCTTGTACAT 516107 >seq2 Length=9028361 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||||||||||||||||| || || || || | | | |||| || || || ||||| | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || ||||| || |||||||||||| | || || ||||| || || || ||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 78905 TTTGTGGAATTTCCCA 78920 | || ||||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267004328000