Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq18 95.1 2e-14 >seq2 Length=9028361 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||||||||| |||||||| || || || || | | || | || ||||| ||||| || | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| || |||||||||||| | || || ||||| || || || ||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 70988 TTTGTGGAATTTCCCA 71003 | || ||||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 >seq18 Length=652692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||||| |||||||| | ||||||||||| ||||||||||| || ||||| Sbjct 264264 ATCTTTGATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGC 264323 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||| || |||||||| | | || ||||||| ||| ||||| Sbjct 264324 GATCTGGAAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTC 264368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137522152000