Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq12 98.7 1e-15 seq14 87.8 3e-12 >seq2 Length=9028361 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 97134 TACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATC 97193 ||||| |||| || || ||| || || || || | | |||||||| | |||||| Sbjct 7431590 TACGAACAAGGAGGTCGCTACAAGAAGCGCATCCCGGCTCAAAAACTGTGGCACGCCATC 7431531 Query 97194 GTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC 97253 || ||||||| ||| || |||| ||| | ||| | |||||||| | || || Sbjct 7431530 CTGGACGCTCAGGCAGAAACCGGAAGTCCTTTCATCGTTTACAAGGACCACTGCAACCGA 7431471 Query 97254 AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTA 97313 || |||||||| | ||||||| ||||||||| |||| |||||||||||||| || || Sbjct 7431470 AAGAGCAACCAGCAAAACTTGGGTACCATCAAGTGCTCGAATCTGTGCACGGAGATCGTC 7431411 Query 97314 GAGTACGCCTCTCCGGACGAG 97334 |||||| |||||| || ||| Sbjct 7431410 GAGTACAGCTCTCCAGAAGAG 7431390 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| || || || |||||| | || |||| || ||| | | Sbjct 7431878 TCTACTTGGAGCCGTGGCACGCCGATGTCTTCGACTTTCTGGAACTGCGGAAGAACACCG 7431819 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 | | || ||| ||||||| | || | ||| || | ||| | || || | |||| Sbjct 7431818 GGTCCGAGGAGCAACGAGCCCGAGATCTCTTTCTGGCCTTGTGGATCCCCGACCTCTTCA 7431759 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCA--CCCGG 97087 || |||||| | || ||| ||||| | | |||||||| || || | ||||| Sbjct 7431758 TGCGTCGCGTCCAGGAGAACGGCGACTGGTGTTTGATGTGCCC--ACACGAAAGCCCCGG 7431701 Query 97088 TCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 ||||| || |||||||||||||| |||| Sbjct 7431700 ACTGTCGGACGTTTGGGGCGAAGAGTTCGAGG 7431669 >seq12 Length=1744794 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/191 (71%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCG 127371 || || ||||| ||| | |||||||| || || || |||| |||| | | |||||| Sbjct 1705440 CCTGCAATGATCAGCTTGGGTTTGAAAAGCTTTGCGTTCTCTCGAAGTCTTTCGTAGTCG 1705381 Query 127372 ACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 | || || || | || | ||||||||||||||| || ||||| |||| ||||||||| Sbjct 1705380 ATGATGCCGGTTTCCGGGTTCACCTTGTACGGCATACTCTCGAAGAAGATTGATGTAGCT 1705321 Query 127432 GACA--CGTTGC----------GGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | |||| | || |||||||| || || || |||||||| ||||| Sbjct 1705320 GAGATGCGTTTCTTTTCCGTCATAAACCCGTGCGTGAGATGTCCACCGTCGGGAAGATCC 1705261 Query 127480 AGTCCCATGAT 127490 |||||||| || Sbjct 1705260 AGTCCCATTAT 1705250 >seq14 Length=1536585 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || |||||| | || || ||||| | | || || || | |||| | ||||| Sbjct 515750 CTGTTCAACGCAGTTGAAACCATGCCGAGTGTGAAGAAGAAAGCGGATTGGGCGCTTCGG 515691 Query 125391 TGGATC--GATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 |||||| || | | ||| | || | | ||| || | || || |||||||| || | Sbjct 515690 TGGATCTCGAATA-GTGAAG-CATCTTTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTG 515633 Query 125449 AGGGCATCTTCTTTTCGGGTAGT--TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 |||||||||| |||| | || || |||||||| || ||||||||||| || || || Sbjct 515632 AGGGCATCTT--TTTCAGTGGGTCCTTCGCGGCCATATTCTGGCTCAAGAAACGAGGGCT 515575 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||| || |||| |||| ||||| | ||| ||| ||||||| Sbjct 515574 CATGCCAGGCTTGACCTACAGCAACGAACTGATAAGTCGCGACGAGG 515528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057347352000