Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 1e-11 >seq2 Length=9028361 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/222 (69%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || | ||| | ||||||||||| || |||||||| ||||||| | ||| | Sbjct 3913188 CGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACA----GGGTTCG 3913243 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||| |||||||| ||| || | ||||||||| |||| || |||||||| Sbjct 3913244 GCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTC 3913303 Query 33271 TTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || || | ||| || || | | || ||||| |||| || || || Sbjct 3913304 CTTGTCTTGAATTTTGGCC---TTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAG 3913360 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || |||||||| || || || |||||||| ||||| Sbjct 3913361 GGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776822979600