Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 136 9e-27 seq1 125 2e-23 >seq2 Length=9028361 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || |||||||| || || ||||| || || |||| || ||||| || || Sbjct 3913428 TGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCCAGCTGC 3913487 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||||||||| ||||| || |||||||| ||||||||||| Sbjct 3913488 TTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAATCTTG 3913547 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || || || || ||||| || || || ||||| ||||| Sbjct 3913548 GCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCCAGTG 3913607 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| Sbjct 3913608 AGGGTCTTGACAAAGATCTGCAT 3913630 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | || || ||||||||||| |||||||| || || || ||||| Sbjct 3912962 AAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTC 3913021 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| || || | | || || || ||||| || ||||| ||||| Sbjct 3913022 TTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATC 3913081 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| ||||| || | |||||| |||||| || || | || || || Sbjct 3913082 TTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGT 3913141 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || ||||| || || || || ||||| Sbjct 3913142 CTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| ||||| || || ||||| |||||||| | |||||| ||||| ||| Sbjct 4632524 ATACCTTCTTTGTCCTGGATTTTGGCTTTCACATTTTCGATGGTATCCGATGGTTCGACC 4632465 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || ||||| || || || || || ||||| ||||||||||| Sbjct 4632464 TCGAGCGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATTTT 4632415 >seq1 Length=9333084 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||||||||| || || || ||||| || ||||| || Sbjct 5359998 GTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCG 5360057 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| |||||||| ||||| || || Sbjct 5360058 GCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5360117 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | ||| ||| ||||| | || || ||||| ||||| | || Sbjct 5360118 ACATTCTCGATCGTGTC-CGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTCAACGT 5360176 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 5360177 CTTGACGAAGATCTGCAT 5360194 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | ||||| || ||||| || || |||||||| || || | || || Sbjct 5359527 AGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCC 5359586 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| || ||||| || || | |||||||| ||||| || ||||| || ||| Sbjct 5359587 TCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCC 5359646 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || || ||| ||||| || || || || Sbjct 5359647 TGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTT 5359706 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || |||||||| Sbjct 5359707 TTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395449541600