Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 194 3e-45 seq2 192 9e-45 >seq12 Length=1744794 Score = 194 bits (214), Expect = 3e-45 Identities = 199/260 (77%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || ||||| |||||||| || ||||||||||| || ||| Sbjct 274038 GCCAAGCGTCATCGCAAAGTCCTCCGAGACAACATCCAGGGTATCACCAAGCCTGCCATC 274097 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||| ||||| |||||||| ||||||| | |||| || |||| Sbjct 274098 CGTCGTCTGGCTCGTCGAGGTGGTGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGACG 274157 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | || | || || ||| ||| |||| ||||||| || ||| ||||| Sbjct 274158 CGAGGAGTCCTCAAAGTGTTTCTGGAGAACGTCATCCGTGATGCTGTCACCTACACCGAA 274217 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| |||||| |||||||| |||| || || ||||| | || || Sbjct 274218 CACGCCAAACGCAAGACAGTCACCGCCATGGATGTCGTTTACGCTTTGAAGAGACAGGGA 274277 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | |||||||| || Sbjct 274278 CGTACTTTGTATGGTTTCGG 274297 >seq2 Length=9028361 Score = 192 bits (212), Expect = 9e-45 Identities = 186/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 7824582 GCCAAGCGTCACCGCAAAGTGCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATC 7824641 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||||||| |||| || | |||| || || | Sbjct 7824642 CGTCGTCTGGCTCGTCGTGGAGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAAACC 7824701 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| ||||||| ||| ||| |||| ||| ||| || ||| ||||| Sbjct 7824702 CGCGGTGTCTTGAAGGTCTTCCTGGAGAACGTCATCCGTGACGCTGTCACCTACACCGAA 7824761 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||||||| ||||||| | ||||| ||| | ||||| ||||| Sbjct 7824762 CACGCCAAGAGGAAGACTGTCACCGCCATGGACGTTGTCTACGCACTCAAACGCCAAGG 7824820 Score = 188 bits (208), Expect = 1e-43 Identities = 185/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 7600077 GCCAAGCGTCACCGCAAAGTGCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATC 7600136 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||||||| |||| || | |||| || || | Sbjct 7600137 CGTCGTCTGGCTCGTCGTGGAGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAAACC 7600196 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 7600197 CGCGGTGTCTTGAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGAA 7600256 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||||||| ||||||| | ||||| ||| | ||||| ||||| Sbjct 7600257 CACGCCAAGAGGAAGACTGTCACCGCCATGGACGTTGTCTACGCACTCAAACGCCAAGG 7600315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075017138600