Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq1 82.4 7e-11 >seq2 Length=9028361 Score = 111 bits (122), Expect = 2e-19 Identities = 201/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 ||||| | ||||| || || ||| ||| | || || |||||| ||| || | | Sbjct 7730695 GATGACTTGTGGAACGCCGCGCAGATGCAGATGAACAGAGAAGGTAAATGTCATGGTTTC 7730636 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 | ||||||||||||||||| ||||| || |||||||| | | || | |||||||| Sbjct 7730635 ATGCGCATGTACTGGGCCAAGAAGATCCTTGAGTGGACGGAGAACCCACAACAGGCGCTG 7730576 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 |||| || || | | || |||| || || | || || || || || || || ||| Sbjct 7730575 GAGTTCTCCATAAAGTTGAATGATAAGTATAGCTTGGATGGACGAGACCCGAATGGCTAT 7730516 Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917 || || ||||||||| ||| || || || || ||| |||||| | ||| Sbjct 7730515 GTGGGATGCATGTGGTCCATCTGTGGAACACATGACCAGGGCTGGGCAGAACGAGAGGTG 7730456 Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTG 71971 ||||| || |||||||||||||| |||||| || | | ||||| ||||| Sbjct 7730455 TTTGGAAAGATTCGCTATATGAACTATAATGGATGTAAGAGAAAGTTTGATGTG 7730402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || ||| | || || || | |||||| | ||| | ||| | Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | |||||| |||||| || || ||||| || ||||| || || Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || ||||| || || ||||| | || | |||||||||||||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAAC 3912995 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || ||| |||| |||| || Sbjct 3912994 ATTCAGAAAGAGTCGACTCTCCACTTGGTACT 3912963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| |||| | || | Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | ||||| |||||| ||||||||||| || ||||| |||||| Sbjct 3913570 GACACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCAA 3913511 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || ||||||| ||| | || |||||| ||| Sbjct 3913510 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAAC 3913451 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || | || ||||||| Sbjct 3913450 ATCCAGAAAGAGTCGACCCTACACTTGGTCCT 3913419 >seq1 Length=9333084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || ||| | ||||| | || | ||| | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| |||||| ||||| ||||| || ||||| |||||| Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || ||||| || || |||| | | | | ||||| ||| Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 5359559 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || |||||| | ||| | ||||| | ||| | || ||| Sbjct 5359558 ATACAGAAGGAGTCTACTCTTCATTTAGTCCTCCGTCTTCGTGGTGGA 5359511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661203344000