Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq2 116 3e-21 >seq1 Length=9333084 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||| ||||| || |||||||| |||||| Sbjct 5359740 CCACCTCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTC 5359799 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||||||| |||| | ||| ||||||||||| || Sbjct 5359800 AAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGA 5359859 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | ||| | ||| || | | ||| | Sbjct 5359860 ATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACT 5359919 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| ||| | || || || || || || || ||||| ||||||||| || Sbjct 5359920 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATGCCT 5359970 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || |||||||| | || |||||||| || |||||||| || Sbjct 5359512 CCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAA 5359571 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||| || || || |||| | ||| || || ||||||||| Sbjct 5359572 AGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGG 5359631 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | ||| | || || | | |||| Sbjct 5359632 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACC 5359691 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || | || || ||||| |||||||| Sbjct 5359692 TCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | ||| ||||| || || |||||||| || Sbjct 5359967 GCCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 5360026 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | || | || || ||||| ||||| ||| |||| | ||||||||||||||||| Sbjct 5360027 TAGGGTCCTGCCA-TCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAG 5360085 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| || || ||| || ||||| | ||| | || || | || || | Sbjct 5360086 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCA 5360145 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 5360146 CCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCATG 5360195 >seq2 Length=9028361 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || |||| ||||||||| || || |||||||| ||| Sbjct 3913404 CCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 3913463 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| | |||||| || ||||||||| Sbjct 3913464 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGG 3913523 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||||| | ||| | || || | || ||| | Sbjct 3913524 ATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACC 3913583 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 3913584 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || | ||| | ||||||||| || || || ||||| || | Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || || |||| | ||| ||||| |||||||| Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||| | ||| | ||| || | | || | Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || ||||| || || |||||||||||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || || || | |||||||| || |||||||| || ||||| Sbjct 3912948 CCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTG 3913007 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || ||||||||||| ||| |||| || || ||||||||||||||| Sbjct 3913008 AGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGG 3913067 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || |||| | ||| | ||||| | | || | Sbjct 3913068 ATACCTTCCTTATC-TTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCAC 3913126 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| || ||||| Sbjct 3913127 TTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011619968000