Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 seq1 87.8 1e-12 >seq2 Length=9028361 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||||||||| || | ||| || | ||| || || ||||| || || || |||||||| | Sbjct 3913175 CCCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 3913234 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| | | || |||| || || || ||| | || || || || || ||| ||| Sbjct 3913235 CAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGG 3913294 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| ||||| ||| || | | | |||||| || ||| Sbjct 3913295 AATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCAC 3913354 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 3913355 TTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||| || || ||||||||||||| Sbjct 3913404 CCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 3913463 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || |||| || ||||| || | || || |||||||| ||| ||| Sbjct 3913464 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGG 3913523 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||| | ||| || | | | ||||| |||||| Sbjct 3913524 ATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACC 3913583 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || |||||||| |||||||| Sbjct 3913584 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || |||||||| || || ||||||||||| | Sbjct 5359968 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAT 5360027 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || |||| |||||||| || | || || ||||| |||||| ||| Sbjct 5360028 AGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 5360087 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || ||| || | | | ||||| || ||| Sbjct 5360088 ATGCCTTCCTTATCCTGGATCTTGGC--CTTGACATTCTCGATCGTGTCCGAGGCTTCCA 5360145 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| ||| ||||| || |||||||| Sbjct 5360146 CCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087012598000