Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq186 127 1e-24 seq30 127 1e-24 seq17 127 1e-24 seq1 116 2e-21 seq194 114 9e-21 seq2 113 3e-20 >seq186 Length=1365 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 177 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 236 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 237 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 271 >seq30 Length=21282 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 8334 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 8393 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 8394 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 8428 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 17552 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 17611 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 17612 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 17646 Score = 114 bits (126), Expect = 9e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1478 CTCTCTCTTCAAAGTGCTTTTCAATTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 1537 Query 20007 GGTAATATTTAGCCTT 20022 ||| |||||||||||| Sbjct 1538 GGTCATATTTAGCCTT 1553 Score = 114 bits (126), Expect = 9e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 10696 CTCTCTCTTCAAAGTGCTTTTCAATTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 10755 Query 20007 GGTAATATTTAGCCTT 20022 ||| |||||||||||| Sbjct 10756 GGTCATATTTAGCCTT 10771 >seq17 Length=777369 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 764873 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 764814 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 764813 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 764779 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 774092 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 774033 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 774032 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 773998 Score = 114 bits (126), Expect = 9e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 771730 CTCTCTCTTCAAAGTGCTTTTCAATTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 771671 Query 20007 GGTAATATTTAGCCTT 20022 ||| |||||||||||| Sbjct 771670 GGTCATATTTAGCCTT 771655 >seq1 Length=9333084 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | || ||||||||||| |||||| || || ||||| ||||| Sbjct 5359512 CCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAA 5359571 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | ||||| || ||||| || || ||||||||||| | ||| Sbjct 5359572 AGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGG 5359631 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||| || ||| || |||| || || || | ||| || Sbjct 5359632 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACC 5359691 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| ||||||||||| || ||||| |||||||| Sbjct 5359692 TCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 >seq194 Length=1062 Score = 114 bits (126), Expect = 9e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 741 CTCTCTCTTCAAAGTGCTTTTCAATTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 682 Query 20007 GGTAATATTTAGCCTT 20022 ||| |||||||||||| Sbjct 681 GGTCATATTTAGCCTT 666 >seq2 Length=9028361 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| || ||||| || | |||||| || ||| || || |||||||| |||||| Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || || ||||| ||||| | || Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| |||||| ||| ||||||| || ||| ||| | ||| ||| Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| | || || ||||| |||||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946383566200