Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18 104 3e-17 seq2 96.9 4e-15 >seq18 Length=652692 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | ||||| || ||||| | ||||||||||||||||||||||| || ||||| Sbjct 264264 ATCTTTGATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGC 264323 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || ||||||||| | | ||| ||||||||||| ||||| Sbjct 264324 GATCTGGAAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTC 264368 >seq2 Length=9028361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||||||||| |||||||| || || || || | | | |||| || || || ||||| | Sbjct 7429923 TCCATCCGTAGAAATGCATGCTAGTCAGCTTCGCAAAGTTCGGTTCGGCAATGTGGATGT 7429982 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || ||||| || |||||||||||| | || || ||||| || ||||| ||| Sbjct 7429983 TCAAGGACTGACTCTGGCAGATGAAGGCTCCACGATCCGCCGCCATCTTGATAATGCTCT 7430042 Query 62037 TTTGTGGAATTTCCCA 62052 | || ||||||||||| Sbjct 7430043 TCTGCGGAATTTCCCA 7430058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630415920000