Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq2 104 2e-17 >seq1 Length=9333084 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| ||||||||||| ||||| Sbjct 5359966 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTCT 5359907 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||||| ||| |||| || | || ||||| |||||||||||||| || Sbjct 5359906 GACACTATCGAGAACGTCA---AAGCTAAGATCCAG-GACAAGGAAGGGATTCCACCGGA 5359851 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || ||||| || | ||||| | || || || |||| || Sbjct 5359850 CCAGCAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGCGACTA 5359791 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || ||||| || || || Sbjct 5359790 CAACATCCAGAAGGAATCGACCCTCCA 5359764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||| || || ||||||| | || ||||| | Sbjct 5360197 ACCATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCC 5360138 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| | ||| || ||| || || ||||| ||||| || ||| Sbjct 5360137 TCGGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGAC 5360078 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||||||||| | ||||||| | || | || ||| Sbjct 5360077 CAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTAC 5360018 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || || || || Sbjct 5360017 AACATCCAGAAAGAGTCCACCCTTCACTTGGTCCT 5359983 >seq2 Length=9028361 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| | || || || ||||||| |||| || ||| | Sbjct 3913633 ACGATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCC 3913574 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| |||||| | ||| | || | ||| ||||||||||| || || || || Sbjct 3913573 TCTGACACGATCGAGAACGTCAAGGCCAAGATTCAG-GACAAAGAAGGTATCCCTCCGGA 3913515 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || || || ||||| || | ||||||| || || | ||| || Sbjct 3913514 TCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTA 3913455 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| || || ||||| || || || Sbjct 3913454 CAACATCCAGAAAGAGTCGACCCTACACTTGGTCCT 3913419 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| |||||||||| | || Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | || || |||| ||| ||||| ||||| ||||| || || || Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCA-AGACAAGGAAGGCATTCCTCCGGATCA 3913284 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| || || | ||||||| || || || || ||||| Sbjct 3913283 GCAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAA 3913224 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| || || || ||| | || || | || ||||||| Sbjct 3913223 TATCCAGAAAGAGTCGACCCTTCATCTCGTCCTGCGTCTGCGAGGAGG 3913176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 50981 CCACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTT 51040 |||| | |||||| | |||||| || ||||||||||| | || | ||||| | | Sbjct 7730401 CCACATCAAACTTTCTCTTACATCCATTATAGTTCATATAGCGAATCTTTCCAAACACCT 7730460 Query 51041 TGCGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAA 51099 |||||| | | |||| || || || || || |||||||| || |||||||| Sbjct 7730461 CTCGTTCTGCCCA-GCCCTGGTCATGTGTTCCACAGATGGACCACATGCATCCCACATAG 7730519 Query 51100 TTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAAC-CCAA 51158 || || || || ||||||| ||| || | ||| || | ||||| | ||| ||| Sbjct 7730520 CCATTCGGGTCTCGTCCATCCAAGCTATACTTATCATTCAACTTTATGG-AGAACTCCAG 7730578 Query 51159 TGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTA 51218 ||| | || | |||||| || | || |||||||||||||||||||||||| | Sbjct 7730579 CGCCTGTTGTGGGTTCTCCGTCCACTCAAGGATCTTCTTGGCCCAGTACATGCGCATGAA 7730638 Query 51219 ACCGTG-CATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 ||| || ||| || || || | | |||| || || | ||||||||| || ||| Sbjct 7730639 ACCATGACAT-TTACCTTCTCTGTTCATCTGCATCTGCGCGGCGTTCCACAAGTCATCGG 7730697 Query 51278 GAGTTTGGCA 51287 ||| |||| Sbjct 7730698 CTGTTCGGCA 7730707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326943763000