Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq14 100 3e-16 seq18 84.2 2e-11 >seq14 Length=1536585 Score = 100 bits (110), Expect = 3e-16 Identities = 187/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | || |||||||| ||||||||||||||||| || || ||| Sbjct 515833 ATGTACGTGTCGATCAGCAAGCTGTACATTTCCGAATGGACATTCTCCATGGCGATCTGG 515892 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| | | ||||| | ||||| |||||||| || || | ||| | Sbjct 515893 AAGCCGTAGAATGAGCGGGCTTCAGGTATCTGGACTTCTTGCGAGAACCGCTCGGTTAAG 515952 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||| ||||| || || ||| || || || || |||| || | | || | Sbjct 515953 TTTTCGTTGACGATGCCGTCGCTAGCGGCGAAGAAGGCCAGGATTGTACTGACGAAGAGC 516012 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 | || || || || || | | ||| || | ||||| | || || |||||||| Sbjct 516013 TGTTCTTCGTCATTCAGGCTGTTCCAGTCTTCCATGTCTTTGGCCAGGTCTACTTCTTCC 516072 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || ||||| || || || |||||| |||||||| Sbjct 516073 ACGGTCCAGAAGGAGGCCGTTGCTTTCTTGTACAT 516107 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || ||||| || |||||| | || || ||||| | || |||||||||||| Sbjct 515530 TCGTCGCGACTTATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCTTG 515589 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| ||||| | || || ||| ||||| || || || || || || || || Sbjct 515590 AGCCAGAATATGGCCGCGAAGGACCCACTGAAAAAGATGCCCTCAACCGCGGCGAACGCG 515649 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | |||||| ||||| ||| | || | |||||| | |||||||| ||| Sbjct 515650 ACGACTCGTTCGCCAAAAGATGCTTCACTATTCGAGATCCACCGAAGCGCCCAATCCGCT 515709 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || ||||| | || || | ||||| | ||||| || ||| | |||| Sbjct 515710 TTCTTCTTCACACTCGGCATGGTTTCAACTGCGTTGAACAGGAACTCTC 515758 >seq18 Length=652692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| |||| ||||||||| ||||| | ||||| || || || ||| Sbjct 264271 ATGTATGTGTCGATCAACAAGCTATACATTTCCGAATGAATGTTCTCGATGGCGATCTGG 264330 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || |||||||| | | |||||| || ||||||||||| || Sbjct 264331 AAGCCGTAGAAGAAGCGAGCTTCGGTAATCTGCACTTCCTG 264371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859407848000