Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 1e-12 seq5 89.7 1e-12 seq1 89.7 1e-12 seq8 84.2 4e-11 >seq12 Length=1744794 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| | |||| |||||||||| Sbjct 324877 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAGC 324818 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 324817 CCCCCGTTGGGC 324806 >seq5 Length=3294854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| | |||| |||||||||| Sbjct 1039078 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAGC 1039019 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 1039018 CCCCCGTTGGGC 1039007 >seq1 Length=9333084 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| ||||||||||||| | |||| |||||||||| Sbjct 443104 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGATGTCGGGGGTTCGAGC 443163 Query 142564 CCCACATCGGGC 142575 ||| | | |||| Sbjct 443164 CCCCCGTTGGGC 443175 >seq8 Length=2054787 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||||||||||||||||||||||| || || |||| || |||| |||||||| Sbjct 1624702 TAGCCCGGTTAGCTCAGTCGGTAGAGCGTCAGGCTTTTAACCTGAATGTCGGGGGTTCGA 1624761 Query 142562 GCCCCACATCGGGC 142575 ||||| |||||||| Sbjct 1624762 GCCCCCCATCGGGC 1624775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834166168200