Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 190 4e-43 seq1 188 1e-42 seq3 149 1e-30 seq10 111 3e-19 seq14 86.0 1e-11 seq8 86.0 1e-11 >seq2 Length=9028361 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||||| | ||||||||| || || |||||||| || |||||||| ||| Sbjct 3912947 TCCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCT 3913006 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||||| || ||||| | |||||| || ||||| || | | ||| ||||| || || Sbjct 3913007 GAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGG 3913066 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||| ||||||||||| || ||||| ||| ||||| || | | ||| || Sbjct 3913067 GATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCAC 3913126 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| || || || || ||||||||||| || ||||| Sbjct 3913127 TTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| || | || || || |||||||| ||||| || || || || Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || ||||| | ||| || || || ||| Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||| || |||||||| |||||| ||||||| | ||| ||| Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || |||||||| || ||||||||||| |||||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||||||||| || |||||||| |||||||| || |||||| Sbjct 3913404 CCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 3913463 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | ||||| || || || Sbjct 3913464 AGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGG 3913523 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| ||||||||| |||||| ||||| | | || || Sbjct 3913524 ATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACC 3913583 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || |||||||||||||| || |||||||| Sbjct 3913584 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || ||||||||||| |||||||| || || || Sbjct 5359968 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAT 5360027 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| |||||||| | ||| || |||||||| || || | || ||||| || ||| Sbjct 5360028 AGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 5360087 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| |||||||| |||||| ||||| | | ||| || Sbjct 5360088 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACC 5360147 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||||| |||||||| Sbjct 5360148 TCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | || || || || || ||||| || || ||||| || || || Sbjct 5359511 TCCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGA 5359570 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | ||| || || || || || || | |||||| || || || Sbjct 5359571 AAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGG 5359630 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||||| |||||||| ||||||||| |||||||||||| | | ||| || Sbjct 5359631 GATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGAC 5359690 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||||| ||||| | |||||||||||| |||||||| Sbjct 5359691 CTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || || || || |||||||| || ||| Sbjct 5359740 CCACCTCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTC 5359799 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | |||||| || ||||| ||||| | ||| ||||| |||||| Sbjct 5359800 AAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGA 5359859 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| || |||||| |||||| ||||| | | || ||| Sbjct 5359860 ATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACT 5359919 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| ||||||||||||||||| |||||||| Sbjct 5359920 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | || || || |||||||| ||||||||||| || || Sbjct 1625412 CCACCACGGAGGCGCAGGACGAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCTGAC 1625471 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||||||| |||||||| | |||||| |||||||| || | | ||||| || || || Sbjct 1625472 AGTGTCCTGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCCGGAGGG 1625531 Query 68355 ATGCCT 68360 || ||| Sbjct 1625532 ATACCT 1625537 >seq3 Length=5402078 Score = 149 bits (164), Expect = 1e-30 Identities = 210/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || || ||||||||||| || ||||| ||||| || ||||| || || || | || Sbjct 1088026 GGACTTTCGTGGTTGAAAAGTATGCCATTGCAAGCATACATGTTGTACGCTTCCCTAAAG 1087967 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 || | ||| ||||||| ||| ||| ||| || || | ||||| || || || | ||| Sbjct 1087966 TTGATGACGATCCAGTAGGCATACAGCTTGGCTACGCCATACGGTGATCGCGGGTAGAAC 1087907 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCT 268582 || || || ||| |||||||| || |||| ||||| | ||||| ||| || ||| Sbjct 1087906 GGGGTGGTTTCCTTCTGAGGGATCTCCTGGACCTTGCCGTAAAGCTCACTGGTGGAAGCT 1087847 Query 268583 TGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGA 268642 ||||||||||| || | | | || ||||| ||| ||| || ||||| | |||||| Sbjct 1087846 TGGTAGAACTTCACAGTGTCTCCCAGCCCGCACGTTCTGATGGCGTCGAGAAGTCGAAGA 1087787 Query 268643 GTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGA 268697 || || | |||||| |||| || ||||| || || ||||| ||||||| || Sbjct 1087786 GTACCTACGCCATCGACGTTGGCAGTATATTCGCCCAAGTCGAAGGACACCTAGA 1087732 >seq10 Length=1854772 Score = 111 bits (122), Expect = 3e-19 Identities = 220/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 176070 GGAATGTTAGTGCTAAATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGG 176129 ||||| || ||| | || ||||| || ||| | || || ||||||| | ||| Sbjct 1316059 GGAATCTTCGTGGACCAGCCGGTTCCGATACCTTCGGCGCCGTTGACCAGGACCATGGGG 1316000 Query 176130 ATGGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGC 176189 ||| ||||| ||| | || ||||| ||| | | ||| || | ||||||||| || Sbjct 1315999 ATGATGGGACAATACCACTCGGGTTCGATCTTCTGGTTGTCGTCGTAGAGGTAGTTGAGA 1315940 Query 176190 AGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATA 176249 || || |||| |||||||||| || | || | | | ||| ||| | |||||||| Sbjct 1315939 AGTGGCATGTCGTCCTTGTGGAAGATGGCTCGCGCGGTTGGGCTCAGCAGGGTGAAGATG 1315880 Query 176250 TACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGA 176309 || | | | || ||||| || |||||| | ||| | |||||| || |||||||| Sbjct 1315879 TAACGGGGACTTGCGCTGTCTTTCCCTCCGAGGTTGCGAGTACCGAACTGACCGCGAGGC 1315820 Query 176310 AGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCC 176369 |||||| |||||||| || || || |||| || |||| ||||| || | | | Sbjct 1315819 TGAAGCAGGTTGATGTTGTTGCTGCCGACAAAGTCCTGCGCCAACCCGACAATCGTGGAC 1315760 Query 176370 TGGAGAGACGCCTCGCCGTGGTGATA 176395 || ||| ||||||||||| || Sbjct 1315759 ATCAGCGACTGTTCGCCGTGGTGGTA 1315734 >seq14 Length=1536585 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||| ||||| ||||||| |||| |||||||||| Sbjct 328699 GCCCGGTTAGCTCAGTCGGTAGAGCGTCAGGCTTTTAACCTGAATGTCGGGGGTTCGAGC 328758 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 328759 CCCCCATCGGGC 328770 >seq8 Length=2054787 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||| ||||| ||||||| |||| |||||||||| Sbjct 1624704 GCCCGGTTAGCTCAGTCGGTAGAGCGTCAGGCTTTTAACCTGAATGTCGGGGGTTCGAGC 1624763 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1624764 CCCCCATCGGGC 1624775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620095944000