Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq1 95.1 1e-14 >seq2 Length=9028361 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || |||| || || ||||| || |||||||| ||| Sbjct 3913401 ATACCTCCACGGAGACGGAGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCG 3913460 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || |||||| |||| ||||||||||| |||||| Sbjct 3913461 GAGAGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGA 3913520 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| || | | || | ||||| | || || Sbjct 3913521 GGGATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCA 3913580 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || || || || ||||| |||||||| Sbjct 3913581 ACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 3913630 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||| || ||||| | || | ||||| || || || ||| Sbjct 3912978 GTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCA 3913037 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | || || ||||||||||| || ||||| || || |||||| ||| Sbjct 3913038 GCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGAATCTTGGCTTTG 3913097 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | ||| || |||| ||| | || ||||| ||||| || Sbjct 3913098 ACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGTCAGTGTC 3913157 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 3913158 TTGACGAAGATTTGCAT 3913174 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || | ||| | || || ||||| || || ||||| || Sbjct 3913173 ATCCCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 3913232 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || || || |||||||||| || || |||||| Sbjct 3913233 GACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGA 3913292 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 3913293 GGAATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCC 3913352 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || || || || ||||||||||| Sbjct 3913353 ACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 >seq1 Length=9333084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| || |||||||| || Sbjct 5359965 ATGCCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCA 5360024 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| || ||||| || ||| |||| |||||||| ||||||||| Sbjct 5360025 GATAGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGA 5360084 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | || | ||||| | || ||| Sbjct 5360085 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCC 5360144 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| || | || ||||| |||| || || || || |||||||||| Sbjct 5360145 ACCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCATGG 5360196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133375922400