Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 156 8e-33 seq18 140 6e-28 seq14 136 7e-27 >seq2 Length=9028361 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 |||||||||| |||||| || || || ||||||| |||||||| | || Sbjct 7431669 CCTCGAACTCTTCGCCCCAAACGTCCGACAGTCCGGGGCTTTCGTGTGGGCACATCAAAC 7431728 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| |||||| |||| ||| | |||||||||||||||||||||| | |||| | | Sbjct 7431729 ACCAGTCGCCGTTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATCCACAAGGCCAGAA 7431788 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 |||| || | || | ||||| || || || |||||||||| ||| |||| |||||| | Sbjct 7431789 AGAGATCTCGGGCTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCAGTTCCAGAAAGTCGA 7431848 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||| ||||||| ||||||| ||||| ||||| ||| || || |||| Sbjct 7431849 AGACATCGGCGTGCCACGGCTCCAAGTAGATAGCGAAGGCACCCGGACGCT 7431899 >seq18 Length=652692 Score = 140 bits (154), Expect = 6e-28 Identities = 170/228 (75%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || || ||||||||||||| | | ||||||||| ||||||||||| | Sbjct 264136 CTGTTTAACGCTGTGGAGACGATGCCGTCTGTGCGGAAGAAGGCTGACTGGGCGCTGAGT 264077 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | || |||| || | |||||| | | || ||||| | |||||||| Sbjct 264076 TGGATCAACTCGTCCAACGCCACCTACGGCGAACGCGTCGTCGCCTTCGCTTCCGTCGAG 264017 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA--AGGTGTCGA 42786 |||||||||||| ||| ||||||||||||||||||||||| | | | ||| | | Sbjct 264016 GGCATCTTCTTCAGTGGCTCCTTCGCCTCCATCTTCTGGCTC-CGTAAACGAGGAAT-AA 263959 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 |||| || ||||||||| |||||||||||||| | ||||||| || Sbjct 263958 TGCCTGGTCTCACCTTCAGCAACGAACTCATCAGTCGCGACGAGGTGC 263911 >seq14 Length=1536585 Score = 136 bits (150), Expect = 7e-27 Identities = 198/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || | |||| |||||||| || || | ||||||||||| ||| Sbjct 516107 ATGTACAAGAAAGCAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGGCCAAAGAC 516048 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | || | |||| | ||| ||| | ||| || | ||| ||| | || |||||| Sbjct 516047 ATGGAAGACTGGAACAGCCTGAATGACGAAGAACAGCTCTTCGTCAGTACAATCCTGGCC 515988 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||||||||| |||||||| ||||| || ||| | || ||||| | |||| Sbjct 515987 TTCTTCGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGTTCTCGCAAGAA 515928 Query 42489 GTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || ||| ||| | || || |||| ||||||||||||||||| ||||| ||||| || || Sbjct 515927 GTCCAGATACCT-GAAGCCCGCTCATTCTACGGCTTCCAGATCGCCATGGAGAATGTCCA 515869 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 || || ||||| | ||| || ||||||||||| Sbjct 515868 TTCGGAAATGTACAGCTTGCTGATCGACACGTACATC 515832 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || | || || ||||| | | |||||||| ||||| |||||||| Sbjct 515750 CTGTTCAACGCAGTTGAAACCATGCCGAGTGTGAAGAAGAAAGCGGATTGGGCGCTTCGG 515691 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| || | || ||| | || ||||| | | || || || |||| || ||| Sbjct 515690 TGGATCTCGAATAGTGAAGCATCTTTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAG 515631 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGAT 42787 |||||||| ||| || ||||||| |||| |||||||||||| | ||| || || Sbjct 515630 GGCATCTTTTTCAGTGGGTCCTTCGCGGCCATATTCTGGCTCAAGAAACGAGGGCTC-AT 515572 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || | |||| | |||||||| || || | ||||||| Sbjct 515571 GCCAGGCTTGACCTACAGCAACGAACTGATAAGTCGCGACGAGG 515528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336839152000