Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 seq17 95.1 1e-14 >seq30 Length=21282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 114329 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 114385 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 4531 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 4587 Query 114386 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 4588 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 4629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 115526 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 115582 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 4531 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 4587 Query 115583 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 4588 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 4629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 114329 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 114385 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 13749 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 13805 Query 114386 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 13806 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 13847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 115526 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 115582 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 13749 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 13805 Query 115583 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 13806 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 13847 >seq17 Length=777369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 115526 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 115582 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 768676 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 768620 Query 115583 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 768619 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 768578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/102 (84%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 114329 AATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAA 114385 |||| |||||||| |||||||||||||||| |||||||| |||| ||| || |||||| Sbjct 768676 AATG-CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTAG 768620 Query 114386 GGAACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 |||||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 768619 TGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 768578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061432160400