Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq1 131 4e-25 seq10 89.7 1e-12 >seq2 Length=9028361 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| ||| || || || ||||| | || || || |||||| Sbjct 3913440 TCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 3913499 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 3913500 ATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTTC 3913559 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||||||||| ||||| || || || |||||||| Sbjct 3913560 TCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACA 3913619 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3913620 AAGATCTGCAT 3913630 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| || ||||| |||||||| ||||| | || || || || ||| Sbjct 3913191 AGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCT 3913250 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| || ||||| ||||| || ||| || || ||||| || || Sbjct 3913251 TCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCT 3913310 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || ||||| || || || || || |||| || | ||| |||||||| ||||| ||| Sbjct 3913311 TGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTC 3913370 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| |||||||| Sbjct 3913371 TTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | |||||| | || | || ||||| || || ||||||||| Sbjct 3912947 TCCACCACGCAGGCGAAGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCT 3913006 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | ||||||||| | || || || |||||||||| || || || || Sbjct 3913007 GAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGG 3913066 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| ||||| || || || ||||| || || || || | ||| | ||| || Sbjct 3913067 GATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCAC 3913126 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 3913127 TTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| ||||||||||| |||||||| ||||| || | ||| | ||| || Sbjct 4632524 ATACCTTCTTTGTCCTGGATTTTGGCTTTCACATTTTCGATGGTATCCGATGGTTCGACC 4632465 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||| ||||| || ||||| || || ||||||||| Sbjct 4632464 TCGAGCGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATT 4632417 >seq1 Length=9333084 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || |||||| | || ||||||||||| | || || |||||||| Sbjct 5359775 TTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAA 5359834 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || || ||| || ||||| || |||||||| || ||||| ||||| Sbjct 5359835 GATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTT 5359894 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || |||||||| ||||| ||||| || || || |||||||| Sbjct 5359895 CTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGAC 5359954 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 5359955 GAAGATCTGCAT 5359966 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | ||||| || || || || || || ||||| | Sbjct 5359511 TCCACCACGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGA 5359570 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| || || | ||||| || || ||||||||||| |||||| || Sbjct 5359571 AAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGG 5359630 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || ||||| || || || || ||||| || || | || | ||| || Sbjct 5359631 GATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGAC 5359690 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || || || |||| ||||||||||| |||||||| Sbjct 5359691 CTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 5359738 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| || | |||| ||| ||||| ||||| || |||| Sbjct 5359964 CATG-CCTCCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGT 5360022 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || | || ||||| | ||||| || ||||||||||||||||| || Sbjct 5360023 CAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCG 5360082 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| ||||||||||| || || || || || || || | || | || Sbjct 5360083 GAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTT 5360142 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 5360143 CCACCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 5360194 >seq10 Length=1854772 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 325115 TTATCTACGATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATA 325174 |||| | |||||||| ||| ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 1316089 TTATTGATGATGTCTTCAGGATTGTAGTTGGGAATCTTCGTGGACCAGCCGGTTCCGATA 1316030 Query 325175 CCACTCGATCCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATC 325234 || | || || ||||||| | || || | || ||| |||| ||||||||| Sbjct 1316029 CCTTCGGCGCCGTTGACCAGGACCATGGGGATGATGGGACAATACCACTCGGGTTCGATC 1315970 Query 325235 TTATCGCCGTCGTCGTACATATATTTCAGAAG 325266 || | | ||||||||| | || || ||||| Sbjct 1315969 TTCTGGTTGTCGTCGTAGAGGTAGTTGAGAAG 1315938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651377135600