Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq2 107 2e-18 >seq1 Length=9333084 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || |||||||| || | | ||| | | ||||| ||||| Sbjct 5359992 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGT 5360051 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || ||||||||||| |||||||| ||||| || || || || || Sbjct 5360052 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTG 5360111 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || || ||| ||||| || | ||| | ||||||||| ||| Sbjct 5360112 GCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTC 5360171 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || ||||| Sbjct 5360172 AACGTCTTGACGAAGATCTGCAT 5360194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || || |||||||| || | ||| || ||||||| ||||||||||| Sbjct 5359770 GTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCT 5359829 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| || |||||||| || ||||| ||||| || || || | | || ||||| Sbjct 5359830 GCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGA-TCTTAGCTTT 5359888 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || ||| || |||||||| | || | ||||| || || | || Sbjct 5359889 GACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGT 5359948 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 5359949 CTTGACGAAGATCTGCAT 5359966 >seq2 Length=9028361 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| |||||||| || || || || | ||||||| ||||||||||| Sbjct 3912978 GTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCA 3913037 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || |||||||| ||||| || ||||| || ||||| | | || ||||| Sbjct 3913038 GCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTG-AATCTTGGCTTT 3913096 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | ||||| | |||||||| | || | ||||||||| |||| || Sbjct 3913097 GACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGTCAGTGT 3913156 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 3913157 CTTGACGAAGATTTGCAT 3913174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | || ||| || | ||||| ||||||||||| Sbjct 3913434 GTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCCAGCTGCTTGCCA 3913493 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||| || || ||||| || |||||||| || || || || ||| Sbjct 3913494 GCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAATCTTGGCCTTG 3913553 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| || || || || | || | ||||||||| || | || Sbjct 3913554 ACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTC 3913613 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 3913614 TTGACAAAGATCTGCAT 3913630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643550888000