Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq18 86.0 6e-12 >seq2 Length=9028361 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || |||||||| || |||||||| || || || || | Sbjct 3913188 CGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCA 3913247 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| || |||| | || |||||||| ||||| ||||| |||||| Sbjct 3913248 TCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTG 3913307 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||||| ||||| | |||| ||||| | | || ||||||| ||| | Sbjct 3913308 TCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATT 3913367 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || || ||||||||||| Sbjct 3913368 GTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 >seq18 Length=652692 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 |||||||| ||||| || ||| | ||||||||||| || |||||||||||||| |||||| Sbjct 263347 GAGAATCCCTTCGACTTCATGGAAAACATTTCGCTGGAAGGCAAGACCAACTTCTTCGAG 263288 Query 47562 AAGCGCGTCGGCGAATA 47578 ||||| || || || || Sbjct 263287 AAGCGAGTGGGAGAGTA 263271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499611248000