Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 96.9 3e-15 >seq2 Length=9028361 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| || || || || || |||||||| || || Sbjct 3913173 ATCCCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 3913232 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| |||| || ||||| || | || | |||||||| ||||| Sbjct 3913233 GACAGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGA 3913292 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||||||||| |||| || | ||||| |||| || Sbjct 3913293 GGAATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCC 3913352 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || || || ||||| || || || ||||| ||||| Sbjct 3913353 ACTTCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || || || ||||| ||||||| || | || |||| || Sbjct 3912972 TGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTGC 3913031 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| |||||||||||||| || || ||||| ||||||||||| || Sbjct 3913032 TTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGAATCTTG 3913091 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||| || |||| || ||||| | || | || ||||| || Sbjct 3913092 GCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGTC 3913151 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||||||| Sbjct 3913152 AGTGTCTTGACGAAGATTTGCATC 3913175 >seq1 Length=9333084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| ||||| || || ||||| | |||| || ||| Sbjct 5359758 ACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCC 5359817 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || |||||| | || | |||||||||||||| ||||| ||||| || || || Sbjct 5359818 AGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGG 5359877 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | || | ||||| || | ||| |||||||| || | || || Sbjct 5359878 ATCTTAGCTTTGA-CGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTT 5359936 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 5359937 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002069992000