Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq1 147 5e-30 >seq2 Length=9028361 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | |||||| || || || |||||||| || |||| |||||||||| || || Sbjct 3913181 TCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGT 3913240 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||||||||||||||| ||||||||||| ||||| |||||| ||| || Sbjct 3913241 TCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCC 3913300 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| || ||| || |||| ||||||| | ||| || || | Sbjct 3913301 TTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAG 3913360 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || ||||| || Sbjct 3913361 GGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTG 3913399 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || |||||||| || |||| ||||||||| | | || | |||||| Sbjct 3913419 AGGACCAAGTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCT 3913478 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| |||||||| || |||||| || |||||| ||| Sbjct 3913479 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCC 3913538 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||||| | | || || || | |||||| ||| Sbjct 3913539 TGAATCTTGGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTC 3913598 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 3913599 TTGCCAGTGAGGGTCTTGACAAAGATCTG 3913627 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||||||||| || || | ||| ||||| | |||||||| ||| Sbjct 3912963 AGTACCAAGTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCT 3913022 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| | || |||||||||||| || ||||| || Sbjct 3913023 TCCAGCTGCTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCT 3913082 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || || | ||| || | | ||| || ||||| ||||| ||| Sbjct 3913083 TGAATCTTGGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTC 3913142 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 3913143 TTGCCTGTCAGTGTCTTGACGAAGATTTG 3913171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| |||||| | |||||||||||| || ||||| ||||| Sbjct 4632733 CCTTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGTTTTCCAGCGAAA 4632674 Query 199499 ATGAGACGCTGCTGGTCCGG 199518 || | ||||||||| ||||| Sbjct 4632673 ATCAAACGCTGCTGATCCGG 4632654 >seq1 Length=9333084 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | |||||||||||||| ||||| ||||| |||| ||||||||| ||| || Sbjct 5359745 TCGAAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAGGT 5359804 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| |||||||||||||| || |||||||||||||| ||||||||||| ||| || Sbjct 5359805 TCGTCCGTCTTCCAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCC 5359864 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| || ||| |||| ||||| | | || || || | Sbjct 5359865 TTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAG 5359924 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 5359925 GGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 5359963 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || ||||| || |||| ||||||||||| | ||||| |||||| Sbjct 5359983 AGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCT 5360042 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||||||||| |||||||||||||||||| ||| ||||| ||| Sbjct 5360043 TCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCC 5360102 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | ||| || ||||| ||||| ||| Sbjct 5360103 TGGATCTTGGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTC 5360162 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 5360163 TTGCCAGTCAACGTCTTGACGAAGATCTG 5360191 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || ||||| |||||||| || | ||||||||||| | || Sbjct 5359518 CGAAGACGGAGGACTAAATGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTG 5359577 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| |||||||| || || || ||||| ||||| || || |||||| || ||| Sbjct 5359578 CGTCCATCCTCCAGCTGTTTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCT 5359637 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || |||| | Sbjct 5359638 TCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGC 5359697 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| | || || || || || || Sbjct 5359698 GTGATGGTTTTGCCCGTCAAGGTCTTGACGAAGATCTG 5359735 Score = 114 bits (126), Expect = 3e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || ||||||||||| || |||| ||| ||||| | || ||| Sbjct 1625418 CGGAGGCGCAGGACGAGATGAAGAGTCGACTCTTTCTGGATGTTATAGTCTGACAGTGTC 1625477 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || ||||||||||||||||||||||||||||| | |||||| || |||||| Sbjct 1625478 CTGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCCGGA 1625528 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||||||| |||||||||| ||||| || | || || ||| |||||||| Sbjct 1625509 ATCTTCGCCGGAAAGCAGCTGGAAGATGGCAGGACACTGTCAGACTATAACATCCAGAAA 1625450 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| |||||||| || || Sbjct 1625449 GAGTCGACTCTTCATCTCGT 1625430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178918579013400