Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq2 98.7 1e-15 >seq1 Length=9333084 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| ||||| || | | || || ||||| ||||||||||| Sbjct 5360003 CTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTGTTTGCCGGCGAA 5360062 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 5360063 GATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 5360122 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | |||||| |||| |||||||| ||||| |||| ||| || || Sbjct 5360123 CTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGTCAACGTCTTGAC 5360182 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 5360183 GAAGATCTGCAT 5360194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| | || || ||||| || || || || Sbjct 5359547 CTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGTTTACCCGCAAA 5359606 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || || || | || | || ||||||||| ||||| ||||| | Sbjct 5359607 GATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTT 5359666 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| |||||||||||||||||||| || || || Sbjct 5359667 CTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCCCGTCAAGGTCTTGAC 5359726 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 5359727 GAAGATCTGCAT 5359738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| | || || |||| || ||||||||||| ||||| Sbjct 5359776 TCCTTCTGGATGTTGTAGTCGCTCAAGGTTCGTCCGTCTTCCAGCTGCTTGCCTGCGAAG 5359835 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | | ||||||||| |||||| |||| || Sbjct 5359836 ATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTC 5359895 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || ||||| || | ||||| || || || || || || || || Sbjct 5359896 TCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACG 5359955 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5359956 AAGATCTGCAT 5359966 >seq2 Length=9028361 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || || || | || || ||||||||||| ||||| Sbjct 3913439 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCCAGCTGCTTGCCAGCGAA 3913498 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| || || | || | | || |||||| ||||| ||||| | Sbjct 3913499 GATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAATCTTGGCCTTGACGTT 3913558 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | || || || | ||||||||| ||||| || || || || || Sbjct 3913559 CTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3913618 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 3913619 AAAGATCTGCAT 3913630 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || || |||||| || || | |||| || ||||||||||| ||||| Sbjct 3912983 CTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTGCTTGCCAGCGAA 3913042 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| |||||||| | || | | ||||| || ||||| |||| | Sbjct 3913043 GATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGAATCTTGGCTTTGACATT 3913102 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | |||||| |||| |||||||| ||||| ||||| || || || Sbjct 3913103 CTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGTCAGTGTCTTGAC 3913162 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 3913163 GAAGATTTGCAT 3913174 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| || ||||| | || ||| || |||||||||||||| || Sbjct 3913176 CCTCCTCGCAGACGCAGGACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 3913235 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || |||||||| ||||| || || | || ||||| || | || Sbjct 3913236 AGGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGA 3913295 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| || || ||||| || | | ||||| | |||||| Sbjct 3913296 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACT 3913355 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || ||||| ||||| || || || || ||||| Sbjct 3913356 TCGAGGGTGATTGTCTTTCCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236986904000