Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 168 7e-37 seq1 129 6e-25 seq2 118 1e-21 seq18 109 5e-19 >seq14 Length=1536585 Score = 168 bits (186), Expect = 7e-37 Identities = 190/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||||||||||| || || |||||||||||||| || |||||||| || | || || || Sbjct 515857 TACATTTCCGAATGGACATTCTCCATGGCGATCTGGAAGCCGTAGAATGAGCGGGCTTCA 515916 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | ||| |||||||| | ||| |||||| | ||||||||||||||||||||||| Sbjct 515917 GGTATCTGGACTTCTTGCGAGAACCGCTCGGTTAAGTTTTCGTTGACGATGCCGTCGCTA 515976 Query 133309 GCGGCGAAAAAGGCCAGCA-CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC 133367 |||||||| |||||||| | || | ||| ||| | | || | ||| |||| || | Sbjct 515977 GCGGCGAAGAAGGCCAGGATTGTAC-TGACGAAGAGCTGTTCTTCGTCATTCAGGCTGTT 516035 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||| | |||| |||| |||||| || || || |||||||| || || ||| || Sbjct 516036 CCAGTCTTCCATGTCTTTGGCCAGGTCTACTTCTTCCACGGTCCAGAAGGAGGCCGTTGC 516095 Query 133428 TTTTTTGTACAT 133439 ||| |||||||| Sbjct 516096 TTTCTTGTACAT 516107 Score = 134 bits (148), Expect = 1e-26 Identities = 157/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || |||||||||||| | |||||||| |||||||| || ||||| |||||||| |||||| Sbjct 515542 ATCAGTTCGTTGCTGTAGGTCAAGCCTGGCATGAGCCCTCGTTTCTTGAGCCAGAATATG 515601 Query 132991 GCGGCGAA--ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 || ||||| || | |||| |||| |||||| || || ||||| || || | || | Sbjct 515602 GCCGCGAAGGACCCACTGAAA--AAGATGCCCTCAACCGCGGCGAACGCGACGACTCGTT 515659 Query 133049 CGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGA 133108 |||| || | ||||| | | | |||||| || |||||||| || || || | || | Sbjct 515660 CGCCAAAAGATGCTTCACTATTCGAGATCCACCGAAGCGCCCAATCCGCTTTCTTCTTCA 515719 Query 133109 CGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | | |||||| ||||| | ||||| |||| Sbjct 515720 CACTCGGCATGGTTTCAACTGCGTTGAACA 515749 >seq1 Length=9333084 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| |||| || ||||| | Sbjct 5359966 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTGGAGGCGTCT 5359907 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| ||||| || || ||||| | ||||| Sbjct 5359906 GACACTATCGAGAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCA 5359848 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| ||||| |||||||| |||| || ||| | | ||||||||| Sbjct 5359847 GCAACGTCTCATCTTCGCAGGCAAGCAGCTGGAAGACGGACGAACCTTGAGCGACTACAA 5359788 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || | || || ||| | |||| || Sbjct 5359787 CATCCAGAAGGAATCGACCCTCCACCTTGTCCTCCGTCTTCGAGGTGG 5359740 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||||||||||||||| | || ||||| || | Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || || || | || || Sbjct 5359678 GACACCATCGAGAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCA 5359620 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| ||||||||||| || | |||||||| |||||||| Sbjct 5359619 ACAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAA 5359560 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || || ||||| || || ||| Sbjct 5359559 CATACAGAAGGAGTCTACTCTTCATTTAGTCCTCCGT 5359523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||| |||||||| | || || || ||| | Sbjct 5360194 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACTTTGGAGGTGGAAGCCTCG 5360135 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| || || || || ||||| | ||||| Sbjct 5360134 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGACCAG 5360075 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| |||||||||||||| || | | ||||| ||||||||| Sbjct 5360074 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACCCTATCTGACTACAAC 5360015 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || || ||||| || ||| Sbjct 5360014 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGT 5359979 >seq2 Length=9028361 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| |||| || ||| || | Sbjct 3913630 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTTGAGCCCTCT 3913571 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | |||||||| || || || | || || Sbjct 3913570 GACACGATCGAGAACG-TCAAGGCCAAGATTCAGGACAAAGAAGGTATCCCTCCGGATCA 3913512 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 3913511 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCTCCGACTACAA 3913452 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || |||| || || ||||| || ||| Sbjct 3913451 CATCCAGAAAGAGTCGACCCTACACTTGGTCCTCCGT 3913415 >seq18 Length=652692 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||||||||||||||| || | || ||||| | || ||||| |||||| || ||| Sbjct 263928 ATGAGTTCGTTGCTGAAGGTGAGACCAGGCATTATTCCTCGTTTACGGAGCCAGAAGATG 263987 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | |||||| ||| ||||||| ||||||||||| ||||| || || | ||| ||| Sbjct 263988 GAGGCGAAGGAGCCACTGAAGAAGATGCCCTCGACGGAAGCGAAGGCGACGACGCGTTCG 264047 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110 ||| | ||||| | | |||||| | ||||||||| || ||||| | || Sbjct 264048 CCGTAGGTGGCGTTGGACGAGTTGATCCAACTCAGCGCCCAGTCAGCCTTCTTCCGCACA 264107 Query 133111 CACGGCATCGTTTCGATGGCGTTCAACA 133138 |||||||||| || | ||||| |||| Sbjct 264108 GACGGCATCGTCTCCACAGCGTTAAACA 264135 Score = 102 bits (112), Expect = 8e-17 Identities = 136/185 (74%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 133256 GCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 || ||| ||| | ||| ||| || || || |||||||||||||| |||||||| |||| Sbjct 264512 GCTCTTTGTGACCAAAAGACTC-ACGAGGTTCTCGTTGACGATGCCATCGCTGGCTGCGA 264570 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCG 133374 | ||||||| ||||| |||||| || ||||||| | || ||||| ||||| | Sbjct 264571 AGAAGGCCAAGACGTGGGAGATGAAGTGCTTCTCGTTGGCCGTC-AGCGCTTCCCATTGT 264629 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 || ||||| ||||| || ||||| || ||||| ||||| || |||| || ||| Sbjct 264630 TGCACATCCTTCGACAGATCGACCTCTTCCGTCGTCCAGAACGAAGCTACGGCCTTCTTG 264689 Query 133435 TACAT 133439 ||||| Sbjct 264690 TACAT 264694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171549568000