Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2 104 9e-17 seq8 100 1e-15 seq1 89.7 2e-12 >seq2 Length=9028361 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || |||||||| || || || || || | || || ||| | || Sbjct 3913174 ATGCAAATCTTCGTCAAGACACTGACAGGCAAGACCATCACCTTGGAAGTGGAACCTTCG 3913115 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || ||||||||||||||||| || ||||| || || Sbjct 3913114 GATACCATTGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCTCCGGACCAG 3913055 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || || || || ||||| ||||| || | || ||||| Sbjct 3913054 CAACGCTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGAAGGACACTCAGCGACTATAAC 3912995 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | || || | || || ||||| ||| Sbjct 3912994 ATTCAGAAAGAGTCGACTCTCCACTTGGTA 3912965 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || || || || || ||| | || Sbjct 3913402 ATGCAGATTTTCGTCAAGACGCTAACGGGAAAGACAATCACCCTCGAAGTGGAACCTTCA 3913343 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || ||||||||||| |||||||| |||||||| ||||| Sbjct 3913342 GACACTATCGAGAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCTCCGGATCAG 3913283 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || || || |||||||| |||| || | || || ||| Sbjct 3913282 CAACGTCTCATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCCTGTCTGACTACAAT 3913223 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 3913222 ATCCAGAAAGAGTCGACCCTTCA 3913200 >seq8 Length=2054787 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || ||||| || ||||||||||| || || ||||| || | || || ||||| || Sbjct 10097 GTGACGGATGCTGTCATTACTGTTCCGGCCTACTTCAACGACTCTCAGCGTCAAGCCACA 10038 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| ||| | ||||| || | || || |||||||| || || ||||| ||||| Sbjct 10037 AAGGATGCCGGAAAGATTGCCGGCCTGAACGTCCTTCGAATCATCAACGAACCCACAGCT 9978 Query 451433 GCTGCTCTAGCATATGGACT 451452 || ||| | || |||||||| Sbjct 9977 GCCGCTTTGGCCTATGGACT 9958 >seq1 Length=9333084 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || ||||| || || || || || ||| | ||| Sbjct 5359738 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAAACCATCACGCTGGAGGTCGAAGCTTCT 5359679 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || ||||| || |||||||| || ||||| |||||| Sbjct 5359678 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAA 5359619 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || ||||| || || |||||| | || | | || || || Sbjct 5359618 CAACGTCTGATCTTTGCGGGTAAACAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 5359559 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || ||||| ||||| Sbjct 5359558 ATACAGAAGGAGTCTACTCTTCATTTAGT 5359530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975713337221600