Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 205 1e-47 seq9 111 2e-19 seq5 109 7e-19 >seq8 Length=2054787 Score = 205 bits (226), Expect = 1e-47 Identities = 329/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 7114 TTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA 7173 || ||| | ||| || || || || ||||| ||||| | ||||| || || | | | | Sbjct 869766 TTTTTGGACTTTGGGAATACGGGTGGATCCTCCGACGAGGACGATCTCGTTGA-TCTGGT 869708 Query 7174 T-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGA 7229 | || || ||||| | ||| || | || ||||| || |||| ||| | |||| Sbjct 869707 TCTTGTCCATCTTGGCGTCCTTCAGGGCCTTCTCGACGGGGTCCAAGGTACTT---CGGA 869651 Query 7230 ACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGC 7289 ||| ||| |||||||| ||||| || || ||||| ||||| || ||||| || | || Sbjct 869650 ACATGTCAGCGCACAGTTCTTCAAAGCGAGCTCGGGTGATGGAAGTGTAGAAGTCGATGC 869591 Query 7290 CGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTG 7349 |||| | | ||| ||||| |||||| | | ||| | | || || | |||||||| | Sbjct 869590 CGTCAAAGAGCGAGTCAATCTCAATGCTGGCTTGGGTGCTGGACGACAGGGTTCGCTTGG 869531 Query 7350 CGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCT 7409 | || || || || ||||| | |||||| || || || ||| | |||| || || |||| Sbjct 869530 CACGTTCGCAGGCTGTTCGGAGACGACGGAGAGCCCGAGGGCTGTCGGAGATGTCCTTCT 869471 Query 7410 TATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCAC 7469 | ||||| || || ||||| | |||||| | | || ||||| ||||||| Sbjct 869470 TGTGTTTTCGCTTGAACTCCTGCACGAAGTGGGTGACCATTCGGTTGTCGAAGTCTTCAC 869411 Query 7470 CACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTA 7529 ||||||| || || || || ||||||| |||||||| ||||||||| |||||||| | | Sbjct 869410 CACCCAAATGGGTGTCTCCAGCGGTCGACTTGACTTCGAAGATACCTTCTTCAATGGTCA 869351 Query 7530 ACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 | || ||||| || ||||| || |||| ||| || || | ||||| Sbjct 869350 GGATAGACACATCGAAAGTACCGCCCCCCAAGTCGAAGATCAAAACGTT 869302 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||| |||||||||||| ||||| || || ||||| || || || || || || ||| | Sbjct 869159 TTCTGATCGAGACCGTAAGCGATGGCAGCGGCCGTGGGCTCGTTGATGATGCGGAGAACG 869100 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || ||||| || || || ||||| |||||| Sbjct 869099 TTGAGGCCAGCAATGACTCCGGCATCCTTGGTGGCTTGACGCTGGGAGTCGTTGAAGTAG 869040 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || ||||| |||| ||||| |||| || || || | ||| || | || Sbjct 869039 GCTGGGACGGTGACGACGGCGTTGGTGACGGTCTTGCCCAGGTAAGCTTCGGCAGTCTCC 868980 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| ||| | || ||||| || || || ||||| Sbjct 868979 TTCATCTTGATCAGCACCATGGAGGAGATTTCTTC 868945 Score = 131 bits (144), Expect = 2e-25 Identities = 208/298 (70%), Gaps = 13/298 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| |||||||| || ||||| || || || | | |||||| || ||| | Sbjct 9808 TCAAAGTCTTCGCCACCCAAATGCGTATCTCCAGCTGTAGATCGGACTTCGAACATAGAT 9867 Query 7517 CCTTC----AATGTTTAACAACGAAAC----ATCAAACGTACCACCACCCAGGTCAAAAA 7568 ||||| | ||| || || || ||| || || || || |||||||| |||| Sbjct 9868 CCTTCCGACACTGT-----AAGGATACTGACATCGAATGTTCCGCCGCCCAGGTCGAAAA 9922 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| | ||| ||| | | ||||| || || || || || | ||| || || | Sbjct 9923 TGAGGATGTTTTGCTCGCCCGACATCTTCTTGTCCAGTCCATAGGCCAAAGCGGCAGCTG 9982 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 | ||||| || || || ||||| ||||||||| ||||| || | ||||| || || | Sbjct 9983 TGGGTTCGTTGATGATTCGAAGGACGTTCAGGCCGGCAATCTTTCCGGCATCCTTTGTGG 10042 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 |||| || || || ||||| ||||||||||| || || | ||| || ||||| || || Sbjct 10043 CTTGACGCTGAGAGTCGTTGAAGTAGGCCGGAACAGTAATGACAGCATCCGTCACCTT 10100 Score = 113 bits (124), Expect = 6e-20 Identities = 278/413 (67%), Gaps = 13/413 (3%) Strand=Plus/Plus Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 |||||| | ||||| ||| | ||| | ||||| | || ||||| ||| ||| ||| Sbjct 10175 GCGTCCTTACCTTTCC-ACCCAAATAGGCCTCCGCAGTTTCCTTCATCTTGCCAAGGACC 10233 Query 7793 ATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATC 7852 |||| ||| ||||| | || ||| |||| || || || || ||||| ||| Sbjct 10234 ATCGCACTAATTTCTTCCGGGTTGAAGCTCTTCTTTTCTCCTTTGAATTCGACTTCGATC 10293 Query 7853 ATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGG 7912 |||| || | ||| | || || | || | | ||| | |||||| ||| || Sbjct 10294 TTGGGCTTCCCTCCAGAAGAGGTGA---CTTTGAAGGGCCAGTGTTTCATGTCGGACTGC 10350 Query 7913 ACCTGTTGGTCCGA--AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTT 7970 || ||| || || |||| | ||||||||| ||||| || ||||| || ||||||| Sbjct 10351 AC-TGTAGGGTCGTCGAAACGG-CGTCCGATAAGTCGCTTGGCGTCAAAGACGGTGTTTT 10408 Query 7971 TGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCG 8030 | |||||||||| |||||||| || ||||| || | || ||||| ||| | | Sbjct 10409 GTGCGTTCATGGCTACCTGGTTCTTGGCAGCGTCTCCCACCAGGCGTTCCGTAT---CGG 10465 Query 8031 TAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 |||| ||||| || | |||| || || ||||||||||| || || || || || || || Sbjct 10466 TAAAGGCGACATA-GCTGGGTGTTGTGCGATTCCCTTGATCATTGGCGATGATCTCCACT 10524 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | | | ||| | || || || || || || ||||| | |||||| || Sbjct 10525 TTGCCATGTTGAAAAACACCCACACAACTGTAGGTCGTTCCCAGATCAATCCC 10577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 208/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 6799 GTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATT 6858 ||||||| | | | | |||||||||||| || |||| ||| || |||| || || Sbjct 870257 GTTATCCTTGGTCATTGCACGTTCACCTTCGTACACTTGAATCAAGACACCAGGCTGGTT 870198 Query 6859 ATCTTGTGCCGTTGAGAAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAA 6917 ||| || | |||| | ||| ||| | || | ||||| || || || | | Sbjct 870197 GTCTGAATATGTAGTGAAGGTCTGTGTCTGT-TTGGTGGGAATGGTTGTGTTCCGTTTGA 870139 Query 6918 TAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCA 6977 | | | ||||||| |||||| ||| |||| || | |||||||| | ||||||| Sbjct 870138 TGAGGGCAGTCATAACACCACCGGCAGTCTCGATACCCATGGACAGAGGAGCGACGTCCA 870079 Query 6978 AGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCG 7037 | || | ||| ||||| || | ||| | ||||| | | ||| || ||||| || | Sbjct 870078 ACAGCAGCAGATCTTGCACCGCTTCCGACTTGTCACCAGACAGGATAGCTGCTTGCACTG 870019 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 ||| || || || || || || |||||||| |||| || ||||| || || ||||| | Sbjct 870018 CCGCTCCATAAGCCACGGCTTCGTCGGGGTTGATCGACTTGTTCAGCTCCTTTCCGTTGA 869959 Query 7098 AATAATCC 7105 || ||||| Sbjct 869958 AACAATCC 869951 Score = 86.0 bits (94), Expect = 8e-12 Identities = 238/365 (65%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 ||||| |||||||| | || || || ||||| || ||||| ||||| || | || Sbjct 9185 ATGGCTGCTTGGACAGCGGCTCCATACGCGACGGCTTCATCTGGGTTGATGGAACCGTTG 9244 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || ||||||||||| || ||||| | || | || | ||| ||||| || || Sbjct 9245 AGCTCTTTACCGTTGAAGAAATCCTTCAGCAGCTTCTGGACTTTGGGGATACGAGTGCTG 9304 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 ||||| || | || ||||| | | | || || |||||| | |||| || | | Sbjct 9305 CCACCAACTAGGACAATTTCTTGGATGTCGGACTTGGAGATCTTGGCGTCTGTCAGGGCT 9364 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || || || || | || | | ||||| | || |||||||| ||||| || || Sbjct 9365 TTCTCAACGGGCTGCAGAGTTCCGCGGAAGAGATCGGAGCACAGTTCTTCAAAGCGAGCT 9424 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| || | ||||| || || || || | | |||||||| || | || | | Sbjct 9425 CGGGTGATCTTGCTGTAGAAGTCCACACCTTCATGAAGAGAATCAATCTCCAGGGAGGCT 9484 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 | || |||| || || || || || || || ||||| || || || | ||| || || Sbjct 9485 TCTGTGCTCGAGGACAAGGTGCGTTTGGCTCGTTCACAAGCTGTGCGCAGACGGCGGAGT 9544 Query 7382 GCACG 7386 || || Sbjct 9545 GCTCG 9549 >seq9 Length=1903873 Score = 111 bits (122), Expect = 2e-19 Identities = 197/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| ||||| || || || || || || | |||||||| || Sbjct 1705463 TCAAAATCTTCACCGCCCAAATGGGTGTCACCAGCTGTGGAGCGAACTTCAAACATGGAG 1705404 Query 7517 CCTTCA---ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || || | | | || | ||| || || || ||||| |||| ||| || ||||| Sbjct 1705403 CCCTCTGAGACGGTCAAGATGCTAACGTCGAAGGTGCCACCGCCCAAGTCGAAGATGAGG 1705344 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | |||| ||| | | | ||||| || || || || || | ||| || ||||| ||| Sbjct 1705343 ATGTTCTGTTCGCCTTTCATCTTCTTGTCCAGTCCATAGGCCAGAGCGGCAGCCGTCGGT 1705284 Query 7634 TCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || || || || ||| |||| ||| ||||| | | || |||||||||||||| Sbjct 1705283 TCGTTGATGATGCGCAGCACA-TTCAAGCCGGCAATCTTCCCGGCGTCTTTCGTCGCTTG 1705225 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 ||||| |||||||| ||||| || || || || | || |||| Sbjct 1705224 ACGTTGTGAATCGTTGAAGTAAGCAGGAACTGTGATAACGGCGT 1705181 Score = 95.1 bits (104), Expect = 2e-14 Identities = 205/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 7841 TCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTC 7900 || || |||||| |||| || | ||||| ||| |||| || | | ||||| ||| Sbjct 1704986 TCCACCTCAATCTTGGGCTTTCCTGCAGCGCCGC---TAACTTTGAAGGGCCAATGCTTC 1704930 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 || || | ||||| | |||| || || |||||| || || || || ||||| Sbjct 1704929 ATGTCAGCCTGGACGGTTGGGTCGTCGAAGCGTCGTCCGATGAGGCGTTTGGCGTCAAAG 1704870 Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 || || |||| |||||||||||| || ||||| || || || || | || ||||| Sbjct 1704869 ACGGTATTTTGCGGGTTCATGGCTACCTGATTCTTGGCAGCATCTCCCACCAGCCGTTC- 1704811 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | || || || || || || | |||| || || ||||| || |||||||| || || Sbjct 1704810 --TGTGTCGGTGAAGGCCACATA-GCTGGGAGTTGTGCGATTACCCTGGTCGTTAGCGAT 1704754 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 ||| || || | ||| || |||| ||||| || || || || |||| |||||| Sbjct 1704753 AATCTCCACCTTGCCGTGCTGGAAGACTCCGACACAACTGTAGGTCGTCCCTAGATCAAT 1704694 Query 8140 ACC 8142 || Sbjct 1704693 GCC 1704691 >seq5 Length=3294854 Score = 109 bits (120), Expect = 7e-19 Identities = 211/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 7471 ACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAA 7530 |||||| || ||||| || ||| || |||||||||| || || ||| | | Sbjct 684049 ACCCAAATGGGTATCTCCGTTGGTAGCCACCACTTCAAAGACGCCGTTATCGATGGTCAG 683990 Query 7531 CAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC 7590 | ||| || || || ||||||||||||| ||||| | || | ||| | || | | Sbjct 683989 AAGCGACACGTCGAAGGTACCACCACCCAAATCAAAGACCAGGATATTCTTCTCTCCCT- 683931 Query 7591 TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 |||| || | |||||| |||||||| || || || ||||| || || || || | Sbjct 683930 -----TCTTGTCCAAACCGTAAGCGATAGCGGCAGCGGTGGGTTCGTTGATGATTCGCAT 683876 Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 | | |||||||| ||| || | || || || || || || || | |||||||| Sbjct 683875 AATCTGCAGGCCAGAAATGGTACCGGCGTCCTTGGTGGCAGCACGCTGTGCGTCGTTAAA 683816 Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGAT 7770 |||||| ||||| || ||||| |||| || || |||||| ||||| | || || | Sbjct 683815 GTAGGCAGGGACGGTGACGACGGCGTGGGTCACAGCCTTACCCAGATAAGCCTCGGCCAC 683756 Query 7771 ATCTTTCATTTT 7782 || ||||| || Sbjct 683755 CTCCTTCATCTT 683744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131212168000