Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-38 seq1 150 4e-31 >seq2 Length=9028361 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || |||||||| || |||||||| || | || |||| |||||||| Sbjct 3913194 ACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTTCGGCCATCTTCC 3913253 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||| || || |||||||||||||| ||||||||| Sbjct 3913254 AGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 3913313 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| ||||| || ||||| ||| ||||||||| ||||| | |||||| Sbjct 3913314 ATTTTGGCCTTGACATTCTCGATAGTGTCTGAAGGTTCCACTTCGAGGGTGATTGTCTTT 3913373 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 3913374 CCCGTTAGCGTCTTGACGAAAATCTGCAT 3913402 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| |||||||| ||||| || || ||| || || || || ||||| ||||| Sbjct 3912971 GTGGAGAGTCGACTCTTTCTGAATGTTATAGTCGCTGAGTGTCCTTCCGTCTTCCAGCTG 3913030 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 3913031 CTTGCCAGCGAAGATCAAGCGTTGCTGGTCCGGAGGGATACCTTCCTTATCTTGAATCTT 3913090 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| ||||||||||| |||||| ||||||||| | ||| | ||||| ||||| Sbjct 3913091 GGCTTTGACATTCTCAATGGTATCCGAAGGTTCCACTTCCAAGGTGATGGTCTTGCCTGT 3913150 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 3913151 CAGTGTCTTGACGAAGATTTGCAT 3913174 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || |||||||| || || ||||| |||| || |||| |||||||| ||||| Sbjct 3913427 GTGTAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCCAGCTG 3913486 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 3913487 CTTGCCAGCGAAGATCAGACGCTGTTGATCCGGAGGGATACCTTCTTTGTCCTGAATCTT 3913546 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || ||||| || || || || || || | ||||| || || Sbjct 3913547 GGCCTTGACGTTCTCGATCGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTCTTGCCAGT 3913606 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 3913607 GAGGGTCTTGACAAAGATCTGCAT 3913630 >seq1 Length=9333084 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| || || || ||||| || | ||| || | ||||| || ||||| Sbjct 5359536 TGAAGAGTAGACTCCTTCTGTATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGT 5359595 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || |||||||| || ||||| |||||||| ||||| ||||| || Sbjct 5359596 TTACCCGCAAAGATCAGACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTG 5359655 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||| |||||||| ||| ||| || || || || | || || || ||| Sbjct 5359656 GCCTTGACGTTCTCGATGGTGTCAGAAGCTTCGACCTCCAGCGTGATGGTTTTGCCCGTC 5359715 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 5359716 AAGGTCTTGACGAAGATCTGCAT 5359738 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| || || ||||| || | || || || |||||||| ||||| Sbjct 5359991 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTCCTGCCATCTTCCAGCTG 5360050 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || || ||||| |||||||||||||| || || || || || Sbjct 5360051 TTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTATCCTGGATCTT 5360110 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| || |||||||| |||||| || | || | ||||| || || Sbjct 5360111 GGCCTTGACATTCTCGATCGTGTCCGAGGCTTCCACCTCCAAAGTGATGGTCTTGCCAGT 5360170 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 5360171 CAACGTCTTGACGAAGATCTGCAT 5360194 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 |||||||| || || || || || || || ||||| ||| |||| |||| || ||||| Sbjct 5359758 ACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAG-GTTCGTCCGTCTTC 5359816 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||||||||| || ||||| ||||| || ||||| ||||| ||||| || Sbjct 5359817 CAGCTGCTTGCCTGCGAAGATGAGACGTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTG 5359876 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||||| || ||||| || |||||||| ||||| | ||||| Sbjct 5359877 GATCTTAGCTTTGACGTTCTCGATAGTGTCAGACGCCTCCACTTCGAGGGTGATTGTCTT 5359936 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 5359937 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 5359966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478756953400